miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9280 5' -58.7 NC_002512.2 + 228055 0.66 0.870994
Target:  5'- -gCCcGCGgacGGCugC-GGCGCGGGAGAc -3'
miRNA:   3'- caGGaUGC---CCGugGaUCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 2810 0.66 0.870994
Target:  5'- -gCCgGCGGG-ACCcGGCGCGGGc-- -3'
miRNA:   3'- caGGaUGCCCgUGGaUCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 102278 0.66 0.870994
Target:  5'- -cCCUACGGGCuCCUGGCcaccacCGuGGAc- -3'
miRNA:   3'- caGGAUGCCCGuGGAUCGc-----GC-CCUuu -5'
9280 5' -58.7 NC_002512.2 + 27463 0.66 0.870994
Target:  5'- cUCC-GCGGGuCAcgccacuguuCCgcGCGCGGGAAAa -3'
miRNA:   3'- cAGGaUGCCC-GU----------GGauCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 48094 0.66 0.870994
Target:  5'- gGUCgCUgcugACGGGCaACCgGGCGCuGGAGGa -3'
miRNA:   3'- -CAG-GA----UGCCCG-UGGaUCGCGcCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 27971 0.66 0.869564
Target:  5'- -gCCgAUGGGCgGCCgggcgagauuccGGCGCGGGGAGa -3'
miRNA:   3'- caGGaUGCCCG-UGGa-----------UCGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 92138 0.66 0.863763
Target:  5'- --gCUGCGGGCGCUgcGGCGCGugcaGGAc- -3'
miRNA:   3'- cagGAUGCCCGUGGa-UCGCGC----CCUuu -5'
9280 5' -58.7 NC_002512.2 + 6330 0.66 0.863763
Target:  5'- -gCCcGCGGGgggACCgGGCGCGGGGc- -3'
miRNA:   3'- caGGaUGCCCg--UGGaUCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 208418 0.66 0.863763
Target:  5'- -cUCUACGGGCGCCgcucccGGCGCcGGc-- -3'
miRNA:   3'- caGGAUGCCCGUGGa-----UCGCGcCCuuu -5'
9280 5' -58.7 NC_002512.2 + 91879 0.66 0.863763
Target:  5'- cGUCCggcGCGGGCGgC-GGCGCGGc--- -3'
miRNA:   3'- -CAGGa--UGCCCGUgGaUCGCGCCcuuu -5'
9280 5' -58.7 NC_002512.2 + 116507 0.66 0.863763
Target:  5'- -cCCUGCuGGC-CCUGGUGCGGu--- -3'
miRNA:   3'- caGGAUGcCCGuGGAUCGCGCCcuuu -5'
9280 5' -58.7 NC_002512.2 + 2568 0.66 0.863763
Target:  5'- uUCCU-CGGGCGCC-GGCGCGu---- -3'
miRNA:   3'- cAGGAuGCCCGUGGaUCGCGCccuuu -5'
9280 5' -58.7 NC_002512.2 + 31724 0.66 0.856335
Target:  5'- gGUCCgccgGCcGGCGCCgacccggcccGCGCGGGGc- -3'
miRNA:   3'- -CAGGa---UGcCCGUGGau--------CGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 158826 0.66 0.856335
Target:  5'- -aCCUGCGGGagguGCUga-CGCGGGGGAg -3'
miRNA:   3'- caGGAUGCCCg---UGGaucGCGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 221387 0.66 0.856335
Target:  5'- cUCCU-CGGGCGg--GGCGCGGGc-- -3'
miRNA:   3'- cAGGAuGCCCGUggaUCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 184518 0.66 0.855582
Target:  5'- cGUCCUcgucgcagcagucGCGGGgucaGCCggcGGCGCGGGc-- -3'
miRNA:   3'- -CAGGA-------------UGCCCg---UGGa--UCGCGCCCuuu -5'
9280 5' -58.7 NC_002512.2 + 42571 0.66 0.848716
Target:  5'- -aCggGCGGGCGCCgcgaggcgAGCGgCGGGGc- -3'
miRNA:   3'- caGgaUGCCCGUGGa-------UCGC-GCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 161988 0.66 0.848716
Target:  5'- cGUCgCU-CGuGG-ACCUGGUGCGGGAu- -3'
miRNA:   3'- -CAG-GAuGC-CCgUGGAUCGCGCCCUuu -5'
9280 5' -58.7 NC_002512.2 + 212029 0.66 0.848716
Target:  5'- -cCCUGCGcGaGCACCgcGCcCGGGAGGa -3'
miRNA:   3'- caGGAUGC-C-CGUGGauCGcGCCCUUU- -5'
9280 5' -58.7 NC_002512.2 + 127850 0.66 0.840913
Target:  5'- aGUCCggaGCGGGaucCCgugGGCGCGcGGGAc -3'
miRNA:   3'- -CAGGa--UGCCCgu-GGa--UCGCGC-CCUUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.