miRNA display CGI


Results 21 - 40 of 121 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9281 3' -53.2 NC_002512.2 + 185876 0.66 0.992599
Target:  5'- -cCGGAG-CAAGGucACCCCcucaacgugUGGCg -3'
miRNA:   3'- ccGCCUCaGUUCCuaUGGGGua-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 185857 0.71 0.903438
Target:  5'- aGCGGuacGUCGAGGAgggcGCCUCGggccgcUGGCa -3'
miRNA:   3'- cCGCCu--CAGUUCCUa---UGGGGUa-----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 185515 0.66 0.987371
Target:  5'- cGCGGGGgccugccgcucuUCGAGGGgguggccuaccgGCCCCGcggcgUGGCc -3'
miRNA:   3'- cCGCCUC------------AGUUCCUa-----------UGGGGUa----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 182957 0.68 0.967721
Target:  5'- cGGUGGAugaaGUCGAaguGGuagGCCCCGgucGGCa -3'
miRNA:   3'- -CCGCCU----CAGUU---CCua-UGGGGUaa-CCG- -5'
9281 3' -53.2 NC_002512.2 + 181999 0.67 0.986113
Target:  5'- uGGCGGAcGUCcucGGGGUcagGCCCa---GGCg -3'
miRNA:   3'- -CCGCCU-CAGu--UCCUA---UGGGguaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 180770 0.66 0.990381
Target:  5'- uGGCGuGcAGcCGGGcGAUGCCCCg--GGUg -3'
miRNA:   3'- -CCGC-C-UCaGUUC-CUAUGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 177274 0.67 0.978332
Target:  5'- --gGGAGUcCAGGGAcuugGCCagGUUGGCg -3'
miRNA:   3'- ccgCCUCA-GUUCCUa---UGGggUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 177175 0.66 0.991548
Target:  5'- gGGCGGgaacgGGUCAGuuaucuGAUAUCCCucaaggUGGCu -3'
miRNA:   3'- -CCGCC-----UCAGUUc-----CUAUGGGGua----ACCG- -5'
9281 3' -53.2 NC_002512.2 + 175805 0.66 0.992599
Target:  5'- uGGCGGcGUCccGGcgGCUCCGcucguccgUGGCg -3'
miRNA:   3'- -CCGCCuCAGuuCCuaUGGGGUa-------ACCG- -5'
9281 3' -53.2 NC_002512.2 + 167737 0.66 0.987672
Target:  5'- aGCGGGG-CGAGGAgcUGCCgggCGUcGGCg -3'
miRNA:   3'- cCGCCUCaGUUCCU--AUGGg--GUAaCCG- -5'
9281 3' -53.2 NC_002512.2 + 160946 0.71 0.909522
Target:  5'- uGGgGGGGUCAcgagggGGGAUcCCCCcgaGGCc -3'
miRNA:   3'- -CCgCCUCAGU------UCCUAuGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 160729 0.66 0.991548
Target:  5'- cGGgGGGGauuUCGGGGGgaacggcgccgGCCCCg--GGCa -3'
miRNA:   3'- -CCgCCUC---AGUUCCUa----------UGGGGuaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 159359 0.67 0.980525
Target:  5'- cGGCgucGGGGUCGGGGcg-UCCCAUUcGCg -3'
miRNA:   3'- -CCG---CCUCAGUUCCuauGGGGUAAcCG- -5'
9281 3' -53.2 NC_002512.2 + 158995 0.69 0.948191
Target:  5'- gGGCGGAGgc--GGcgGCCCCGgcguccgcgccgGGCg -3'
miRNA:   3'- -CCGCCUCaguuCCuaUGGGGUaa----------CCG- -5'
9281 3' -53.2 NC_002512.2 + 157037 0.69 0.957653
Target:  5'- cGGCccGGAG-CGAGGA--CCCCGgcaaGGCg -3'
miRNA:   3'- -CCG--CCUCaGUUCCUauGGGGUaa--CCG- -5'
9281 3' -53.2 NC_002512.2 + 156520 0.66 0.991548
Target:  5'- cGGCGGGGcgCGGGGG---UCCGgcGGCg -3'
miRNA:   3'- -CCGCCUCa-GUUCCUaugGGGUaaCCG- -5'
9281 3' -53.2 NC_002512.2 + 154032 0.77 0.601078
Target:  5'- aGCuacGUCAucGGAUACCCCAUUGGCu -3'
miRNA:   3'- cCGccuCAGUu-CCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 153803 0.73 0.796385
Target:  5'- cGGUcaGGAGaguuccguUUAcGGAUAUCCCAUUGGCu -3'
miRNA:   3'- -CCG--CCUC--------AGUuCCUAUGGGGUAACCG- -5'
9281 3' -53.2 NC_002512.2 + 153640 0.69 0.953866
Target:  5'- cGGCGGAcGggagCGGGGGcacgcuccucACCCUcgUGGCg -3'
miRNA:   3'- -CCGCCU-Ca---GUUCCUa---------UGGGGuaACCG- -5'
9281 3' -53.2 NC_002512.2 + 152476 0.71 0.911891
Target:  5'- gGGCGGGuGUCGAGGuuagGCgCCAUUuuguguuucgcgcugGGCa -3'
miRNA:   3'- -CCGCCU-CAGUUCCua--UGgGGUAA---------------CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.