miRNA display CGI


Results 1 - 20 of 135 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9286 5' -55.5 NC_002512.2 + 218297 0.66 0.967505
Target:  5'- gGGGuCCCCGGcCCUG-GGcgGC-CGCu -3'
miRNA:   3'- -UCCuGGGGCCaGGACgCUuuUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 124685 0.66 0.967505
Target:  5'- cGGGACCUCGGgaUCCggGC----GCACGCc -3'
miRNA:   3'- -UCCUGGGGCC--AGGa-CGcuuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 226005 0.66 0.967505
Target:  5'- cGGGACgCCGGUgCUGacucCGAGGACG-ACg -3'
miRNA:   3'- -UCCUGgGGCCAgGAC----GCUUUUGUgUG- -5'
9286 5' -55.5 NC_002512.2 + 37375 0.66 0.967505
Target:  5'- cGGACCCCauGUCCUcCGAGAAgACc- -3'
miRNA:   3'- uCCUGGGGc-CAGGAcGCUUUUgUGug -5'
9286 5' -55.5 NC_002512.2 + 14936 0.66 0.967505
Target:  5'- cGGACCCCGugcGUCC-GCGGccacgggaggacGAAC-CGCg -3'
miRNA:   3'- uCCUGGGGC---CAGGaCGCU------------UUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 24583 0.66 0.964373
Target:  5'- ---cUCCCGGUCCgucgacGCGggGAC-CGCu -3'
miRNA:   3'- uccuGGGGCCAGGa-----CGCuuUUGuGUG- -5'
9286 5' -55.5 NC_002512.2 + 107214 0.66 0.964373
Target:  5'- cGGGCCCCucgccgucaccuGGUUCUGCGGcgccgucaGCACc -3'
miRNA:   3'- uCCUGGGG------------CCAGGACGCUuuug----UGUG- -5'
9286 5' -55.5 NC_002512.2 + 21217 0.66 0.964373
Target:  5'- cGGcCCCCGGgacgCCgcccgggGCGGAGACGgGg -3'
miRNA:   3'- uCCuGGGGCCa---GGa------CGCUUUUGUgUg -5'
9286 5' -55.5 NC_002512.2 + 44478 0.66 0.964373
Target:  5'- aGGGcGCCCCGGggCCggGCGGAGAagACGg -3'
miRNA:   3'- -UCC-UGGGGCCa-GGa-CGCUUUUg-UGUg -5'
9286 5' -55.5 NC_002512.2 + 196262 0.66 0.964373
Target:  5'- cGGuCaCCGGUCgCgGCGGAAGCGCGg -3'
miRNA:   3'- uCCuGgGGCCAG-GaCGCUUUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 24843 0.66 0.964373
Target:  5'- cGGGCCCgCGG-CCggucgGCGGcGGACGCGg -3'
miRNA:   3'- uCCUGGG-GCCaGGa----CGCU-UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 133589 0.66 0.964373
Target:  5'- gGGGACCcgagcgggCCGGccUCCUGCGGAccUACGg -3'
miRNA:   3'- -UCCUGG--------GGCC--AGGACGCUUuuGUGUg -5'
9286 5' -55.5 NC_002512.2 + 140175 0.66 0.964373
Target:  5'- -cGACUUCGGUaaCCUGCucAAGCACAUc -3'
miRNA:   3'- ucCUGGGGCCA--GGACGcuUUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 152705 0.66 0.964373
Target:  5'- -cGuCCCCGGUCggggUGCGGcgggcaggGGACACGCa -3'
miRNA:   3'- ucCuGGGGCCAGg---ACGCU--------UUUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 10909 0.66 0.962058
Target:  5'- cGGACCCCGGgccggaccucccagCCgGCGAcggaggggucgacGAGgACGCc -3'
miRNA:   3'- uCCUGGGGCCa-------------GGaCGCU-------------UUUgUGUG- -5'
9286 5' -55.5 NC_002512.2 + 134040 0.66 0.961035
Target:  5'- gAGGAcgccgcCCCCGGccUCCUGCGGGccguCGcCACc -3'
miRNA:   3'- -UCCU------GGGGCC--AGGACGCUUuu--GU-GUG- -5'
9286 5' -55.5 NC_002512.2 + 110159 0.66 0.961035
Target:  5'- -cGGCCauGGUCgUGCGG--GCGCACg -3'
miRNA:   3'- ucCUGGggCCAGgACGCUuuUGUGUG- -5'
9286 5' -55.5 NC_002512.2 + 213680 0.66 0.961035
Target:  5'- gGGGAgCCCGGcgucgCCcGCGGuccucGAACugGCu -3'
miRNA:   3'- -UCCUgGGGCCa----GGaCGCU-----UUUGugUG- -5'
9286 5' -55.5 NC_002512.2 + 51036 0.66 0.961035
Target:  5'- cGGACCacgcgcaCGuGUgCCUGCGAcccGAGCACGu -3'
miRNA:   3'- uCCUGGg------GC-CA-GGACGCU---UUUGUGUg -5'
9286 5' -55.5 NC_002512.2 + 103737 0.66 0.961035
Target:  5'- cGGACCgCGGcgaUCCUGaaGAGGCGCuACg -3'
miRNA:   3'- uCCUGGgGCC---AGGACgcUUUUGUG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.