miRNA display CGI


Results 1 - 20 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 3' -61.2 NC_002512.2 + 203944 0.66 0.820465
Target:  5'- cGAGGcCCUCGuGG-C-CCGcCGGCCGAc -3'
miRNA:   3'- -CUCUuGGAGCcCCaGaGGC-GCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 2494 0.66 0.820465
Target:  5'- cGGGcGGCCUUGGGGaacggaUCUCCcccgacgccgGCGGCCc- -3'
miRNA:   3'- -CUC-UUGGAGCCCC------AGAGG----------CGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 141906 0.66 0.820465
Target:  5'- ---cGCgUCGGGG-CgCCGCGGCCc- -3'
miRNA:   3'- cucuUGgAGCCCCaGaGGCGCCGGcu -5'
9291 3' -61.2 NC_002512.2 + 139809 0.66 0.820465
Target:  5'- cGGGGGCCUCGgucGGGUgUCCaaggacGUGGgCGAg -3'
miRNA:   3'- -CUCUUGGAGC---CCCAgAGG------CGCCgGCU- -5'
9291 3' -61.2 NC_002512.2 + 91622 0.66 0.820465
Target:  5'- cAGGGCCcccgCGGGGaUCUCCaGCGGguUCGGc -3'
miRNA:   3'- cUCUUGGa---GCCCC-AGAGG-CGCC--GGCU- -5'
9291 3' -61.2 NC_002512.2 + 43295 0.66 0.820465
Target:  5'- -cGAACaggUCGGGGUagagGCGGCCGGu -3'
miRNA:   3'- cuCUUGg--AGCCCCAgaggCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 99267 0.66 0.820465
Target:  5'- cGAGGacGCCggacgCGGGGUCga-GCaggaGGCCGAc -3'
miRNA:   3'- -CUCU--UGGa----GCCCCAGaggCG----CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 196927 0.66 0.820465
Target:  5'- cGAGAGCa-CGGcGGUCUucacguccaUCGUGGCCGc -3'
miRNA:   3'- -CUCUUGgaGCC-CCAGA---------GGCGCCGGCu -5'
9291 3' -61.2 NC_002512.2 + 182002 0.66 0.820465
Target:  5'- cGGAcguCCUCGGGGUCaggCCcagGCGGuaGAa -3'
miRNA:   3'- cUCUu--GGAGCCCCAGa--GG---CGCCggCU- -5'
9291 3' -61.2 NC_002512.2 + 184212 0.66 0.81237
Target:  5'- -cGGACCgCGGGuucUCUCUGgGGUCGAc -3'
miRNA:   3'- cuCUUGGaGCCCc--AGAGGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 5483 0.66 0.80413
Target:  5'- cGGGGACCUCGuGGcGcgCgUCCGC-GCCGGg -3'
miRNA:   3'- -CUCUUGGAGC-CC-Ca-G-AGGCGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 157047 0.66 0.80413
Target:  5'- cGAGGACCccggcaaggCGGGcGUC-CCGgGGuCCGGg -3'
miRNA:   3'- -CUCUUGGa--------GCCC-CAGaGGCgCC-GGCU- -5'
9291 3' -61.2 NC_002512.2 + 46175 0.66 0.80413
Target:  5'- cGGAucuCCUCGGaGGUCUCC-CcGUCGAg -3'
miRNA:   3'- cUCUu--GGAGCC-CCAGAGGcGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 202932 0.66 0.80413
Target:  5'- -cGAACgUCaGGGUCuggcUCCGCcGCCGGu -3'
miRNA:   3'- cuCUUGgAGcCCCAG----AGGCGcCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 142192 0.66 0.80413
Target:  5'- aAGGAUC-CGGGGUCgugUCgGCGcGCCGu -3'
miRNA:   3'- cUCUUGGaGCCCCAG---AGgCGC-CGGCu -5'
9291 3' -61.2 NC_002512.2 + 182797 0.66 0.80413
Target:  5'- cGAGGuucaCgcgCaGGGUCUUCGUGGCUGAc -3'
miRNA:   3'- -CUCUug--Ga--GcCCCAGAGGCGCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 8164 0.66 0.795755
Target:  5'- --aGGCgCUCGGGGaUCUCgGCguagcacccgaGGCCGAg -3'
miRNA:   3'- cucUUG-GAGCCCC-AGAGgCG-----------CCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 123133 0.66 0.795755
Target:  5'- cGAGAGCCggacgCGGaGcGcCgCCGgGGCCGAg -3'
miRNA:   3'- -CUCUUGGa----GCC-C-CaGaGGCgCCGGCU- -5'
9291 3' -61.2 NC_002512.2 + 108441 0.66 0.795755
Target:  5'- cGGGGGCCggGGGGUCccUCCcCGGgCGGc -3'
miRNA:   3'- -CUCUUGGagCCCCAG--AGGcGCCgGCU- -5'
9291 3' -61.2 NC_002512.2 + 191586 0.66 0.795755
Target:  5'- cGAGAGCCUguucGGUCg-CGCGGUCGAg -3'
miRNA:   3'- -CUCUUGGAgcc-CCAGagGCGCCGGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.