miRNA display CGI


Results 1 - 20 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 96190 0.66 0.980582
Target:  5'- cGGUGGuCCgggagGCGGC-CGcGAGGUCGgCCa -3'
miRNA:   3'- -CUAUCuGG-----CGCUGaGC-CUCCAGCaGG- -5'
9291 5' -55.2 NC_002512.2 + 205082 0.66 0.980582
Target:  5'- aGAgcGGCgGCGAuccgucCUCGGGGGgcgCGcCCg -3'
miRNA:   3'- -CUauCUGgCGCU------GAGCCUCCa--GCaGG- -5'
9291 5' -55.2 NC_002512.2 + 79936 0.66 0.980582
Target:  5'- --aAGGCCgagGCGGCgCGGGGGUcCG-CCu -3'
miRNA:   3'- cuaUCUGG---CGCUGaGCCUCCA-GCaGG- -5'
9291 5' -55.2 NC_002512.2 + 106017 0.66 0.980582
Target:  5'- --cGGGCgGCGccGC-CGGGGGUgcggCGUCCu -3'
miRNA:   3'- cuaUCUGgCGC--UGaGCCUCCA----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 102217 0.66 0.980376
Target:  5'- ----cGCCGCGGC-CGGAgcggcccucgaccGGcCGUCCg -3'
miRNA:   3'- cuaucUGGCGCUGaGCCU-------------CCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 24602 0.66 0.978445
Target:  5'- --gGGACCGCuGGgUCGGAaauaucucUCGUCCa -3'
miRNA:   3'- cuaUCUGGCG-CUgAGCCUcc------AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 58044 0.66 0.97614
Target:  5'- ---cGGCCGCGGC-CGGAc--CGUCCc -3'
miRNA:   3'- cuauCUGGCGCUGaGCCUccaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 162166 0.66 0.97614
Target:  5'- ---cGACCGCGAaagCGGccG-CGUCCg -3'
miRNA:   3'- cuauCUGGCGCUga-GCCucCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 195423 0.66 0.97614
Target:  5'- --gGGACgugcaGCGACugguUCGG-GGUCGUCa -3'
miRNA:   3'- cuaUCUGg----CGCUG----AGCCuCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 123723 0.66 0.9759
Target:  5'- gGGUGGACCuGUG-CUCGGAccugcggGGUCGgaCCu -3'
miRNA:   3'- -CUAUCUGG-CGCuGAGCCU-------CCAGCa-GG- -5'
9291 5' -55.2 NC_002512.2 + 43253 0.66 0.9759
Target:  5'- aGUGGcCCGCGGgcagcgagcugguCUCcuggaGGGGGUCGUCg -3'
miRNA:   3'- cUAUCuGGCGCU-------------GAG-----CCUCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 28231 0.66 0.973659
Target:  5'- --aGGaACCGCGGC-CGGGGccGUCGcgCCg -3'
miRNA:   3'- cuaUC-UGGCGCUGaGCCUC--CAGCa-GG- -5'
9291 5' -55.2 NC_002512.2 + 102514 0.66 0.973659
Target:  5'- --gGGAgUCGCGGCcgUCGGGGGUCaggCCc -3'
miRNA:   3'- cuaUCU-GGCGCUG--AGCCUCCAGca-GG- -5'
9291 5' -55.2 NC_002512.2 + 161704 0.66 0.973659
Target:  5'- aGAUGGAgaCGCGGC-CGGcgacGGGaUCGUCUu -3'
miRNA:   3'- -CUAUCUg-GCGCUGaGCC----UCC-AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 176432 0.66 0.973659
Target:  5'- gGGUGGccaucugcGCCGCGG-UCGGGGuGUCGgguUCCg -3'
miRNA:   3'- -CUAUC--------UGGCGCUgAGCCUC-CAGC---AGG- -5'
9291 5' -55.2 NC_002512.2 + 160491 0.66 0.973659
Target:  5'- cGUGGGuuccaucuCCGCGGCgcCGGgaaAGGUCGUCg -3'
miRNA:   3'- cUAUCU--------GGCGCUGa-GCC---UCCAGCAGg -5'
9291 5' -55.2 NC_002512.2 + 188652 0.66 0.973659
Target:  5'- ---cGGCgGCGGCggCGGcccGUCGUCCg -3'
miRNA:   3'- cuauCUGgCGCUGa-GCCuc-CAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 191311 0.66 0.973659
Target:  5'- --gGGGCCGgGACgCGGgucgggacgcGGGUgcCGUCCg -3'
miRNA:   3'- cuaUCUGGCgCUGaGCC----------UCCA--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 104678 0.66 0.973401
Target:  5'- --cGGACCgacgacgacacgcGCGAC-CGGAGucUCGUCCu -3'
miRNA:   3'- cuaUCUGG-------------CGCUGaGCCUCc-AGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 109390 0.66 0.970995
Target:  5'- ----cACCGCGA-UCGGcGGcGUCGUCCc -3'
miRNA:   3'- cuaucUGGCGCUgAGCC-UC-CAGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.