miRNA display CGI


Results 21 - 40 of 138 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9291 5' -55.2 NC_002512.2 + 220682 0.66 0.970995
Target:  5'- ---cGugCuggGCGACgggaCGGAGGUCaGUCCc -3'
miRNA:   3'- cuauCugG---CGCUGa---GCCUCCAG-CAGG- -5'
9291 5' -55.2 NC_002512.2 + 71231 0.66 0.97016
Target:  5'- cGAU-GACCGUGGcCUCGacgucggggucgaaGGGGUCGgagCCg -3'
miRNA:   3'- -CUAuCUGGCGCU-GAGC--------------CUCCAGCa--GG- -5'
9291 5' -55.2 NC_002512.2 + 22571 0.67 0.968438
Target:  5'- cGGUGGugCuggugaaCGGCUCGGAGGccacggugcuggacaCGUCCg -3'
miRNA:   3'- -CUAUCugGc------GCUGAGCCUCCa--------------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 40366 0.67 0.968144
Target:  5'- ---cGACCGCGGCgagcccgggccCGGAGcGUC-UCCa -3'
miRNA:   3'- cuauCUGGCGCUGa----------GCCUC-CAGcAGG- -5'
9291 5' -55.2 NC_002512.2 + 80679 0.67 0.968144
Target:  5'- ---cGGCgGCGGCgaCGGGGGcgagcggCGUCCg -3'
miRNA:   3'- cuauCUGgCGCUGa-GCCUCCa------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 92240 0.67 0.968144
Target:  5'- ---cGACCGgGACUCGGAcgaccGGcUGUCg -3'
miRNA:   3'- cuauCUGGCgCUGAGCCU-----CCaGCAGg -5'
9291 5' -55.2 NC_002512.2 + 202150 0.67 0.968144
Target:  5'- ----cGCCGCGGggCGGGuGGUCGUUCc -3'
miRNA:   3'- cuaucUGGCGCUgaGCCU-CCAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 217741 0.67 0.967551
Target:  5'- --gGGACCGCGACUUGaagaagaaccccGGGccCGUCCc -3'
miRNA:   3'- cuaUCUGGCGCUGAGCc-----------UCCa-GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 171854 0.67 0.9651
Target:  5'- ---cGGCCGCGGC-CgGGAGGgggcggaacgcCGUCCu -3'
miRNA:   3'- cuauCUGGCGCUGaG-CCUCCa----------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 219819 0.67 0.9651
Target:  5'- --cGGGgCGCGACa-GGGGGUCGgucggggggUCCg -3'
miRNA:   3'- cuaUCUgGCGCUGagCCUCCAGC---------AGG- -5'
9291 5' -55.2 NC_002512.2 + 221345 0.67 0.9651
Target:  5'- ---cGACCGCGGgagaagaUGGAGGagCGUCCa -3'
miRNA:   3'- cuauCUGGCGCUga-----GCCUCCa-GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 68919 0.67 0.9651
Target:  5'- -cUGGccGCCGCGGcCUCGGGGGga-UCCc -3'
miRNA:   3'- cuAUC--UGGCGCU-GAGCCUCCagcAGG- -5'
9291 5' -55.2 NC_002512.2 + 34959 0.67 0.964785
Target:  5'- gGAgcGGCCGCGAC-CGGGuccggcuGGgccucgCGUCCc -3'
miRNA:   3'- -CUauCUGGCGCUGaGCCU-------CCa-----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 150768 0.67 0.964785
Target:  5'- uGAUuGACgGcCGACUCGGcGGUgacgucaCGUCCc -3'
miRNA:   3'- -CUAuCUGgC-GCUGAGCCuCCA-------GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 57025 0.67 0.961857
Target:  5'- ---uGACCGgGGggagCGGAGGccgCGUCCg -3'
miRNA:   3'- cuauCUGGCgCUga--GCCUCCa--GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 223742 0.67 0.961857
Target:  5'- --gAGACCGUcg--UGGAGGUCGugUCCg -3'
miRNA:   3'- cuaUCUGGCGcugaGCCUCCAGC--AGG- -5'
9291 5' -55.2 NC_002512.2 + 148803 0.67 0.961857
Target:  5'- ----cGCUGCGGCaccgucUCGGAGcUCGUCCu -3'
miRNA:   3'- cuaucUGGCGCUG------AGCCUCcAGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 197194 0.67 0.961857
Target:  5'- cAUGGACC-CG-CUCGG-GGcCGUCUa -3'
miRNA:   3'- cUAUCUGGcGCuGAGCCuCCaGCAGG- -5'
9291 5' -55.2 NC_002512.2 + 227373 0.67 0.961857
Target:  5'- --gGGGCCGcCGGCgUCGGGGGagaucCGUUCc -3'
miRNA:   3'- cuaUCUGGC-GCUG-AGCCUCCa----GCAGG- -5'
9291 5' -55.2 NC_002512.2 + 39884 0.67 0.961857
Target:  5'- ---cGACCGCGGCcaacuuGAGGUCGaCCu -3'
miRNA:   3'- cuauCUGGCGCUGagc---CUCCAGCaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.