miRNA display CGI


Results 1 - 20 of 553 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9298 3' -58 NC_002512.2 + 229551 0.78 0.348907
Target:  5'- gCCGgGCGgggCGCCGGcggaGGAGCGCgCGCCGg -3'
miRNA:   3'- -GGCgUGCa--GCGGCU----UCUUGCG-GCGGU- -5'
9298 3' -58 NC_002512.2 + 227958 0.67 0.895737
Target:  5'- -aGCGCGggggaGCCGGAGAggagggccccgGCGCCgaggGCCGa -3'
miRNA:   3'- ggCGUGCag---CGGCUUCU-----------UGCGG----CGGU- -5'
9298 3' -58 NC_002512.2 + 227894 0.72 0.611997
Target:  5'- aCGCGggcgagucCGagGCCGGAGAcggacGCGCCGCCu -3'
miRNA:   3'- gGCGU--------GCagCGGCUUCU-----UGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 227653 0.66 0.924194
Target:  5'- gCGCcCGgguCCGGAGGaagagcggcgGCGCCGCCGg -3'
miRNA:   3'- gGCGuGCagcGGCUUCU----------UGCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 227074 0.68 0.862136
Target:  5'- cCCGCGCccgCGCCGGGucccGCcgGCCGCCGg -3'
miRNA:   3'- -GGCGUGca-GCGGCUUcu--UG--CGGCGGU- -5'
9298 3' -58 NC_002512.2 + 226830 0.71 0.679775
Target:  5'- gCCGcCGCGUcCGCCGccgucaaggcGGAGCagGCCGCCAg -3'
miRNA:   3'- -GGC-GUGCA-GCGGCu---------UCUUG--CGGCGGU- -5'
9298 3' -58 NC_002512.2 + 226787 0.67 0.895737
Target:  5'- cUCGgGCGaCGCCGuGGucucggcCGCCGCCGu -3'
miRNA:   3'- -GGCgUGCaGCGGCuUCuu-----GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 226702 0.67 0.901851
Target:  5'- cCCGCgGCGgCGUCGAgcgacGGGAgGCCGCgGg -3'
miRNA:   3'- -GGCG-UGCaGCGGCU-----UCUUgCGGCGgU- -5'
9298 3' -58 NC_002512.2 + 226506 0.67 0.901851
Target:  5'- gCCGCGgGUCcuGCUGgcGGcccUGCCGCCGu -3'
miRNA:   3'- -GGCGUgCAG--CGGCuuCUu--GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 225481 0.66 0.924194
Target:  5'- gCCGC-CGUCGaCCGcgaucuacGGGGcCGCCGCgGg -3'
miRNA:   3'- -GGCGuGCAGC-GGC--------UUCUuGCGGCGgU- -5'
9298 3' -58 NC_002512.2 + 225334 0.68 0.862136
Target:  5'- gCCGCA-GcCGUCGGuc-GCGCCGCCu -3'
miRNA:   3'- -GGCGUgCaGCGGCUucuUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 225028 0.7 0.72727
Target:  5'- gCCGCACG-CGgCGAAccccgcGAugGCCGCg- -3'
miRNA:   3'- -GGCGUGCaGCgGCUU------CUugCGGCGgu -5'
9298 3' -58 NC_002512.2 + 224798 0.7 0.736578
Target:  5'- cCCGCGcCGaCGCCGgcGAcgacgaccaACGCCGCgGg -3'
miRNA:   3'- -GGCGU-GCaGCGGCuuCU---------UGCGGCGgU- -5'
9298 3' -58 NC_002512.2 + 224602 0.68 0.862136
Target:  5'- -gGCGCGggacgcggUGCCGAccgggcucGGGGuCGCCGCCGc -3'
miRNA:   3'- ggCGUGCa-------GCGGCU--------UCUU-GCGGCGGU- -5'
9298 3' -58 NC_002512.2 + 223786 0.84 0.142203
Target:  5'- aCCGgACGUCGCCGggGAcgucggcgGCGaCCGCCGg -3'
miRNA:   3'- -GGCgUGCAGCGGCuuCU--------UGC-GGCGGU- -5'
9298 3' -58 NC_002512.2 + 223261 0.74 0.535425
Target:  5'- gCGUccGCGUCGUCGggGGGCGggaCGCCGc -3'
miRNA:   3'- gGCG--UGCAGCGGCuuCUUGCg--GCGGU- -5'
9298 3' -58 NC_002512.2 + 222651 0.66 0.917307
Target:  5'- gCCGCgACGgccggccggGCCGAGGGGCGCCucgaguucgacugcGCCc -3'
miRNA:   3'- -GGCG-UGCag-------CGGCUUCUUGCGG--------------CGGu -5'
9298 3' -58 NC_002512.2 + 222621 0.67 0.889416
Target:  5'- cUCGCGCccgaUC-CCGAcGGACGCCGCUc -3'
miRNA:   3'- -GGCGUGc---AGcGGCUuCUUGCGGCGGu -5'
9298 3' -58 NC_002512.2 + 222583 0.69 0.807452
Target:  5'- cCCGC-CGUCGCgGAGGAG-GCCuGuCCGg -3'
miRNA:   3'- -GGCGuGCAGCGgCUUCUUgCGG-C-GGU- -5'
9298 3' -58 NC_002512.2 + 222191 0.69 0.78174
Target:  5'- gCCGCggccgGCGUCGuCCGuuucuucgucGGGGugGCCGUCGg -3'
miRNA:   3'- -GGCG-----UGCAGC-GGC----------UUCUugCGGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.