miRNA display CGI


Results 1 - 20 of 86 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9447 5' -48.3 NC_002531.1 + 46303 0.66 0.999288
Target:  5'- cGGAGGCgCuag--CCACUC-CCAGGCa -3'
miRNA:   3'- -CCUUCG-GuuuuaGGUGGGuGGUUUGg -5'
9447 5' -48.3 NC_002531.1 + 35326 0.66 0.999288
Target:  5'- cGAAGCCcAGGUCgGCUggguCACUGGACUa -3'
miRNA:   3'- cCUUCGGuUUUAGgUGG----GUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 103711 0.66 0.999288
Target:  5'- cGGAGCCAGAG-CCugCaGCUGAcCCg -3'
miRNA:   3'- cCUUCGGUUUUaGGugGgUGGUUuGG- -5'
9447 5' -48.3 NC_002531.1 + 102396 0.66 0.999272
Target:  5'- aGGAccCCAAAgauaaGUCUacacccaACCCAcCCAGACCu -3'
miRNA:   3'- -CCUucGGUUU-----UAGG-------UGGGU-GGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 94844 0.66 0.999191
Target:  5'- uGAAGCUAAAgacacuguggcauauGguggCC-CCCACaCGAGCCa -3'
miRNA:   3'- cCUUCGGUUU---------------Ua---GGuGGGUG-GUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 58126 0.66 0.999121
Target:  5'- uGGGuuCCAAAgcgGUCC-CCCACgGAcACCg -3'
miRNA:   3'- -CCUucGGUUU---UAGGuGGGUGgUU-UGG- -5'
9447 5' -48.3 NC_002531.1 + 24908 0.66 0.999121
Target:  5'- --uGGCCucAcgCCACCCagGCUAAAUCu -3'
miRNA:   3'- ccuUCGGuuUuaGGUGGG--UGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 30704 0.66 0.999121
Target:  5'- --cAGUCAcGAaCCauuGCUCACCAAACCa -3'
miRNA:   3'- ccuUCGGUuUUaGG---UGGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 82897 0.66 0.999084
Target:  5'- cGGAGGCauucuugCCcauaGCCCACC--ACCg -3'
miRNA:   3'- -CCUUCGguuuua-GG----UGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 69736 0.66 0.998921
Target:  5'- gGGguGCUguAAUuacuaugcaCCGCCCGCCAagaAACCu -3'
miRNA:   3'- -CCuuCGGuuUUA---------GGUGGGUGGU---UUGG- -5'
9447 5' -48.3 NC_002531.1 + 11439 0.66 0.998921
Target:  5'- aGGAAGCCu---UCgUACCCAacguaaAGGCCg -3'
miRNA:   3'- -CCUUCGGuuuuAG-GUGGGUgg----UUUGG- -5'
9447 5' -48.3 NC_002531.1 + 40107 0.66 0.998921
Target:  5'- gGGGAGUaac-AUCCGCCCcCCucaucguACCa -3'
miRNA:   3'- -CCUUCGguuuUAGGUGGGuGGuu-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 84968 0.66 0.998921
Target:  5'- uGGAcAGCCu---UUCGCCCACUGGuugauGCCc -3'
miRNA:   3'- -CCU-UCGGuuuuAGGUGGGUGGUU-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 77406 0.66 0.998921
Target:  5'- --uAGCUAAug-CCACCCuCgGAGCCc -3'
miRNA:   3'- ccuUCGGUUuuaGGUGGGuGgUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 124021 0.66 0.998921
Target:  5'- aGGAGGCCAAGugaCACUCGuaAAGCa -3'
miRNA:   3'- -CCUUCGGUUUuagGUGGGUggUUUGg -5'
9447 5' -48.3 NC_002531.1 + 113376 0.66 0.998854
Target:  5'- -cAGGCUAuaaaaaacucauuaGAAUCCGCCCAUCu-GCUg -3'
miRNA:   3'- ccUUCGGU--------------UUUAGGUGGGUGGuuUGG- -5'
9447 5' -48.3 NC_002531.1 + 86360 0.66 0.998684
Target:  5'- -aGAGCCAc-AUCCAuaaUCUGCCAGGCUg -3'
miRNA:   3'- ccUUCGGUuuUAGGU---GGGUGGUUUGG- -5'
9447 5' -48.3 NC_002531.1 + 19644 0.66 0.998684
Target:  5'- --cAGCCAu--UCCcCCCACCGcauucuACCu -3'
miRNA:   3'- ccuUCGGUuuuAGGuGGGUGGUu-----UGG- -5'
9447 5' -48.3 NC_002531.1 + 96721 0.66 0.998684
Target:  5'- --cAGCCAAAAagucUCCACCUcucCCAcgucAGCCu -3'
miRNA:   3'- ccuUCGGUUUU----AGGUGGGu--GGU----UUGG- -5'
9447 5' -48.3 NC_002531.1 + 13178 0.66 0.998684
Target:  5'- -cGAGUCAgaGAAUCCAgCCCAgggcuaCAAGCCc -3'
miRNA:   3'- ccUUCGGU--UUUAGGU-GGGUg-----GUUUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.