miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9614 3' -60.6 NC_002577.1 + 10941 0.66 0.754055
Target:  5'- uACcGCGguccCGCGcuuucggacggcGGGCCgGCCAGGGa -3'
miRNA:   3'- -UGuCGCaa--GUGC------------UCCGGgCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 3582 0.66 0.744732
Target:  5'- -uGGCGUguccuccuUCggACGAGuGCuuGCCGGGGa -3'
miRNA:   3'- ugUCGCA--------AG--UGCUC-CGggCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 106444 0.66 0.744732
Target:  5'- uCGGCGggUCA-GAGacGCCCcggcgaucuaucGCCGGGGCg -3'
miRNA:   3'- uGUCGCa-AGUgCUC--CGGG------------CGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 130032 0.66 0.744731
Target:  5'- -uGGCGUguccuccuUCggACGAGuGCuuGCCGGGGa -3'
miRNA:   3'- ugUCGCA--------AG--UGCUC-CGggCGGUCCCg -5'
9614 3' -60.6 NC_002577.1 + 7650 0.66 0.716241
Target:  5'- gGCGGCacggCACGGGGCgcucaaCGCaCAGGGg -3'
miRNA:   3'- -UGUCGcaa-GUGCUCCGg-----GCG-GUCCCg -5'
9614 3' -60.6 NC_002577.1 + 44325 0.66 0.716241
Target:  5'- uUAGCGUUCaACGGGuGCCucgggucuucugCGCCcAGGGg -3'
miRNA:   3'- uGUCGCAAG-UGCUC-CGG------------GCGG-UCCCg -5'
9614 3' -60.6 NC_002577.1 + 125964 0.66 0.716241
Target:  5'- gGCGGCacggCACGGGGCgcucaaCGCaCAGGGg -3'
miRNA:   3'- -UGUCGcaa-GUGCUCCGg-----GCG-GUCCCg -5'
9614 3' -60.6 NC_002577.1 + 34887 0.66 0.716241
Target:  5'- -aAGCGUUCAUG-GGCCuCGgCAGaGCc -3'
miRNA:   3'- ugUCGCAAGUGCuCCGG-GCgGUCcCG- -5'
9614 3' -60.6 NC_002577.1 + 1571 0.66 0.7066
Target:  5'- -gGGCGUgccgCGgauugaggguCGGGGCCgGCgAGGGUg -3'
miRNA:   3'- ugUCGCAa---GU----------GCUCCGGgCGgUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 132043 0.66 0.706599
Target:  5'- -gGGCGUgccgCGgauugaggguCGGGGCCgGCgAGGGUg -3'
miRNA:   3'- ugUCGCAa---GU----------GCUCCGGgCGgUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 159088 0.66 0.696899
Target:  5'- cGCAGCaGUUUcCGAGgacggugauggcGCCCGCCGGccgcGGCc -3'
miRNA:   3'- -UGUCG-CAAGuGCUC------------CGGGCGGUC----CCG- -5'
9614 3' -60.6 NC_002577.1 + 138250 0.66 0.696898
Target:  5'- cGCAGCaGUUUcCGAGgacggugauggcGCCCGCCGGccgcGGCc -3'
miRNA:   3'- -UGUCG-CAAGuGCUC------------CGGGCGGUC----CCG- -5'
9614 3' -60.6 NC_002577.1 + 41926 0.67 0.677352
Target:  5'- -uGGCcgUCugGAGaCCCaCCAGGGCg -3'
miRNA:   3'- ugUCGcaAGugCUCcGGGcGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 107446 0.67 0.657669
Target:  5'- --uGCGgagCuCGAGGaauucCUCGCCAGGGCu -3'
miRNA:   3'- uguCGCaa-GuGCUCC-----GGGCGGUCCCG- -5'
9614 3' -60.6 NC_002577.1 + 139542 0.67 0.657669
Target:  5'- cCGGCGUgCGCGccG-CCGCCGGGcGCg -3'
miRNA:   3'- uGUCGCAaGUGCucCgGGCGGUCC-CG- -5'
9614 3' -60.6 NC_002577.1 + 157795 0.67 0.657668
Target:  5'- cCGGCGUgCGCGccG-CCGCCGGGcGCg -3'
miRNA:   3'- uGUCGCAaGUGCucCgGGCGGUCC-CG- -5'
9614 3' -60.6 NC_002577.1 + 140424 0.67 0.647794
Target:  5'- -gAGCGUUUcCGAGGgcgggggccCCCGUaccaGGGGCg -3'
miRNA:   3'- ugUCGCAAGuGCUCC---------GGGCGg---UCCCG- -5'
9614 3' -60.6 NC_002577.1 + 156913 0.67 0.647794
Target:  5'- -gAGCGUUUcCGAGGgcgggggccCCCGUaccaGGGGCg -3'
miRNA:   3'- ugUCGCAAGuGCUCC---------GGGCGg---UCCCG- -5'
9614 3' -60.6 NC_002577.1 + 102897 0.68 0.628017
Target:  5'- -uGGCGUuaaauucccggUCACGAGGUUCGCCGacGCg -3'
miRNA:   3'- ugUCGCA-----------AGUGCUCCGGGCGGUccCG- -5'
9614 3' -60.6 NC_002577.1 + 38334 0.68 0.627028
Target:  5'- cGCAG-GUucuaauagauucgUCGCccGGCCCGCC-GGGCg -3'
miRNA:   3'- -UGUCgCA-------------AGUGcuCCGGGCGGuCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.