miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9617 5' -47.7 NC_002577.1 + 44341 0.66 0.999817
Target:  5'- -cGGCAcgucAUCGGCGA-CAAggcAUAUGCGAa -3'
miRNA:   3'- cuUUGU----UGGCCGCUcGUU---UAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 124822 0.66 0.999817
Target:  5'- uGGACGAUCcGCGAGCGAcuuaugAUGCGc -3'
miRNA:   3'- cUUUGUUGGcCGCUCGUUua----UACGCu -5'
9617 5' -47.7 NC_002577.1 + 139452 0.66 0.999817
Target:  5'- --uGCAGCCGGCGccgcGGCGGcuucUAUGCc- -3'
miRNA:   3'- cuuUGUUGGCCGC----UCGUUu---AUACGcu -5'
9617 5' -47.7 NC_002577.1 + 157885 0.66 0.999817
Target:  5'- --uGCAGCCGGCGccgcGGCGGcuucUAUGCc- -3'
miRNA:   3'- cuuUGUUGGCCGC----UCGUUu---AUACGcu -5'
9617 5' -47.7 NC_002577.1 + 8792 0.66 0.999817
Target:  5'- uGGACGAUCcGCGAGCGAcuuaugAUGCGc -3'
miRNA:   3'- cUUUGUUGGcCGCUCGUUua----UACGCu -5'
9617 5' -47.7 NC_002577.1 + 100600 0.66 0.999808
Target:  5'- -uAACAACCGG-GGGCAuccugaacGCGAa -3'
miRNA:   3'- cuUUGUUGGCCgCUCGUuuaua---CGCU- -5'
9617 5' -47.7 NC_002577.1 + 140516 0.66 0.999766
Target:  5'- gGAAcCGugCGGaGGGgGGGUAUGCGGa -3'
miRNA:   3'- -CUUuGUugGCCgCUCgUUUAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 156822 0.66 0.999766
Target:  5'- gGAAcCGugCGGaGGGgGGGUAUGCGGa -3'
miRNA:   3'- -CUUuGUugGCCgCUCgUUUAUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 144420 0.66 0.999766
Target:  5'- ---uCGACCGGCGAGCcuagagAAAUuUGCc- -3'
miRNA:   3'- cuuuGUUGGCCGCUCG------UUUAuACGcu -5'
9617 5' -47.7 NC_002577.1 + 155114 0.66 0.999701
Target:  5'- -cGACGGCCGGacaGAGCGAAUuauuaaGCa- -3'
miRNA:   3'- cuUUGUUGGCCg--CUCGUUUAua----CGcu -5'
9617 5' -47.7 NC_002577.1 + 39661 0.66 0.999701
Target:  5'- cGAGGCuaucACCaGGCGAGCGccGGUAaGCGc -3'
miRNA:   3'- -CUUUGu---UGG-CCGCUCGU--UUAUaCGCu -5'
9617 5' -47.7 NC_002577.1 + 142225 0.66 0.999701
Target:  5'- -cGACGGCCGGacaGAGCGAAUuauuaaGCa- -3'
miRNA:   3'- cuUUGUUGGCCg--CUCGUUUAua----CGcu -5'
9617 5' -47.7 NC_002577.1 + 135944 0.66 0.999621
Target:  5'- --cGCGGCCGGCGAcaucaGUcuGUGcUGCGGa -3'
miRNA:   3'- cuuUGUUGGCCGCU-----CGuuUAU-ACGCU- -5'
9617 5' -47.7 NC_002577.1 + 161394 0.66 0.999621
Target:  5'- --cGCGGCCGGCGAcaucaGUcuGUGcUGCGGa -3'
miRNA:   3'- cuuUGUUGGCCGCU-----CGuuUAU-ACGCU- -5'
9617 5' -47.7 NC_002577.1 + 14511 0.66 0.999523
Target:  5'- gGggGC-ACCGGCGAagaucugcccGCGAAUAacaGUGAa -3'
miRNA:   3'- -CuuUGuUGGCCGCU----------CGUUUAUa--CGCU- -5'
9617 5' -47.7 NC_002577.1 + 108879 0.67 0.999405
Target:  5'- gGggGCAAUagCGGuCGAGCcuGAGcgcUGUGCGAu -3'
miRNA:   3'- -CuuUGUUG--GCC-GCUCG--UUU---AUACGCU- -5'
9617 5' -47.7 NC_002577.1 + 65080 0.67 0.999261
Target:  5'- ---cCGGCUGGCGGGCAuGAUAgaaGCGu -3'
miRNA:   3'- cuuuGUUGGCCGCUCGU-UUAUa--CGCu -5'
9617 5' -47.7 NC_002577.1 + 128552 0.67 0.999261
Target:  5'- cGAAgAACCGGcCGAGCA--UcgGCGc -3'
miRNA:   3'- cUUUgUUGGCC-GCUCGUuuAuaCGCu -5'
9617 5' -47.7 NC_002577.1 + 5062 0.67 0.999261
Target:  5'- cGAAgAACCGGcCGAGCA--UcgGCGc -3'
miRNA:   3'- cUUUgUUGGCC-GCUCGUuuAuaCGCu -5'
9617 5' -47.7 NC_002577.1 + 121957 0.67 0.999088
Target:  5'- cGAGGCcGCCGGgGAGgAGGU-UGUGGg -3'
miRNA:   3'- -CUUUGuUGGCCgCUCgUUUAuACGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.