miRNA display CGI


Results 1 - 20 of 49 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9620 5' -49.4 NC_002577.1 + 74545 0.66 0.998953
Target:  5'- uGCCCAuAGUuaaaucuccgccGACGAuGaGCCUgaUCCGUg -3'
miRNA:   3'- -CGGGUuUUA------------CUGCUuC-CGGAa-AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 28152 0.66 0.998727
Target:  5'- gGUCCAAAAUGuCGuGGuauauGCCcaaUUCCGCg -3'
miRNA:   3'- -CGGGUUUUACuGCuUC-----CGGa--AAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 137663 0.66 0.998727
Target:  5'- uGCCCGAuuugaaauaggcGAUGcCGAGGGgCg--UCGCa -3'
miRNA:   3'- -CGGGUU------------UUACuGCUUCCgGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 159675 0.66 0.998727
Target:  5'- uGCCCGAuuugaaauaggcGAUGcCGAGGGgCg--UCGCa -3'
miRNA:   3'- -CGGGUU------------UUACuGCUUCCgGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 160607 0.66 0.99815
Target:  5'- cGCUuCAGGGgggGugGggGGCCUUg-UGCa -3'
miRNA:   3'- -CGG-GUUUUa--CugCuuCCGGAAagGCG- -5'
9620 5' -49.4 NC_002577.1 + 136730 0.66 0.99815
Target:  5'- cGCUuCAGGGgggGugGggGGCCUUg-UGCa -3'
miRNA:   3'- -CGG-GUUUUa--CugCuuCCGGAAagGCG- -5'
9620 5' -49.4 NC_002577.1 + 45439 0.67 0.997787
Target:  5'- uCCCGGGA-GAUGuagagcucccGGGGCCgcauaacgUUCCGCa -3'
miRNA:   3'- cGGGUUUUaCUGC----------UUCCGGa-------AAGGCG- -5'
9620 5' -49.4 NC_002577.1 + 91968 0.67 0.997366
Target:  5'- uGCCCAGuucguagcguuGAUGcCGAcaGCCgcaUCCGCa -3'
miRNA:   3'- -CGGGUU-----------UUACuGCUucCGGaa-AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 132265 0.67 0.997366
Target:  5'- uCCCGGcggcGACGcaAAGGCUgcggUCCGCg -3'
miRNA:   3'- cGGGUUuua-CUGC--UUCCGGaa--AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 134697 0.67 0.997366
Target:  5'- cGUCCGAcuuuGccGugGGAGGCUccauugUCCGCc -3'
miRNA:   3'- -CGGGUU----UuaCugCUUCCGGaa----AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 1349 0.67 0.997366
Target:  5'- uCCCGGcggcGACGcaAAGGCUgcggUCCGCg -3'
miRNA:   3'- cGGGUUuua-CUGC--UUCCGGaa--AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 66103 0.67 0.997366
Target:  5'- aCCUAAuuuUGGCGuguGGGUUUUgUCCGCa -3'
miRNA:   3'- cGGGUUuu-ACUGCu--UCCGGAA-AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 82310 0.67 0.996933
Target:  5'- uGCCCuaguagcggcgcguAGUGGCGcgcAGGCCccgCCGCc -3'
miRNA:   3'- -CGGGuu------------UUACUGCu--UCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 95825 0.67 0.996324
Target:  5'- cGCCUuuAGUGAauuUGAAuGGCgCgggUCCGCg -3'
miRNA:   3'- -CGGGuuUUACU---GCUU-CCG-Gaa-AGGCG- -5'
9620 5' -49.4 NC_002577.1 + 87872 0.68 0.994965
Target:  5'- cGCCaCAAGAUGAaucCGAcaaaauuuuGGGCCagcauugCCGCu -3'
miRNA:   3'- -CGG-GUUUUACU---GCU---------UCCGGaaa----GGCG- -5'
9620 5' -49.4 NC_002577.1 + 159521 0.68 0.994147
Target:  5'- uGCCCAAAGUacGGCGGccGGGCUcaUCC-Cg -3'
miRNA:   3'- -CGGGUUUUA--CUGCU--UCCGGaaAGGcG- -5'
9620 5' -49.4 NC_002577.1 + 137817 0.68 0.994147
Target:  5'- uGCCCAAAGUacGGCGGccGGGCUcaUCC-Cg -3'
miRNA:   3'- -CGGGUUUUA--CUGCU--UCCGGaaAGGcG- -5'
9620 5' -49.4 NC_002577.1 + 66522 0.68 0.993225
Target:  5'- cGUCUAcauUGcgaacGCGAAGGCCUacggCCGCg -3'
miRNA:   3'- -CGGGUuuuAC-----UGCUUCCGGAaa--GGCG- -5'
9620 5' -49.4 NC_002577.1 + 156919 0.68 0.993225
Target:  5'- uUCCGAg--GGCGggGGCCc--CCGUa -3'
miRNA:   3'- cGGGUUuuaCUGCuuCCGGaaaGGCG- -5'
9620 5' -49.4 NC_002577.1 + 140418 0.68 0.993225
Target:  5'- uUCCGAg--GGCGggGGCCc--CCGUa -3'
miRNA:   3'- cGGGUUuuaCUGCuuCCGGaaaGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.