miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 3' -50.2 NC_002577.1 + 74592 0.66 0.99743
Target:  5'- uGCCGGAACgcgaccgGAAAaAGaCUC-CGCGa -3'
miRNA:   3'- gCGGUCUUGa------CUUUaUC-GAGuGCGCg -5'
9624 3' -50.2 NC_002577.1 + 96896 0.66 0.99743
Target:  5'- gCGUCAuGACUG---UGGUcCGCGCGCg -3'
miRNA:   3'- -GCGGUcUUGACuuuAUCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 161714 0.66 0.996955
Target:  5'- aGUCGGGGCcGGGcgGcCUCugGCGCc -3'
miRNA:   3'- gCGGUCUUGaCUUuaUcGAGugCGCG- -5'
9624 3' -50.2 NC_002577.1 + 135624 0.66 0.996955
Target:  5'- aGUCGGGGCcGGGcgGcCUCugGCGCc -3'
miRNA:   3'- gCGGUCUUGaCUUuaUcGAGugCGCG- -5'
9624 3' -50.2 NC_002577.1 + 59946 0.66 0.996409
Target:  5'- -uUCAGugguauuGCUGAuaaauguugacGAUAGCUCGCGgGCc -3'
miRNA:   3'- gcGGUCu------UGACU-----------UUAUCGAGUGCgCG- -5'
9624 3' -50.2 NC_002577.1 + 4715 0.66 0.996409
Target:  5'- aG-CAGAGCUcGGuucgcuucGCUCGCGCGCc -3'
miRNA:   3'- gCgGUCUUGA-CUuuau----CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 128899 0.66 0.996409
Target:  5'- aG-CAGAGCUcGGuucgcuucGCUCGCGCGCc -3'
miRNA:   3'- gCgGUCUUGA-CUuuau----CGAGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 45019 0.66 0.995786
Target:  5'- ---aAGAGCUGAugcGGCacguUCGCGCGCu -3'
miRNA:   3'- gcggUCUUGACUuuaUCG----AGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 24710 0.66 0.995786
Target:  5'- gGCC-GAugUGAAAagAGCUguCGCGa -3'
miRNA:   3'- gCGGuCUugACUUUa-UCGAguGCGCg -5'
9624 3' -50.2 NC_002577.1 + 152549 0.66 0.995001
Target:  5'- cCGUCGGAGCUaucGGAAUgucGGUUUgcaucaaACGCGCa -3'
miRNA:   3'- -GCGGUCUUGA---CUUUA---UCGAG-------UGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 81896 0.67 0.994273
Target:  5'- cCGCCAGGGCUGuuucacGGCggGCgGCGUu -3'
miRNA:   3'- -GCGGUCUUGACuuua--UCGagUG-CGCG- -5'
9624 3' -50.2 NC_002577.1 + 103655 0.67 0.994273
Target:  5'- gCGCUuacGGAGCuuaUGAAcgAGUUCGuauCGCGCa -3'
miRNA:   3'- -GCGG---UCUUG---ACUUuaUCGAGU---GCGCG- -5'
9624 3' -50.2 NC_002577.1 + 137559 0.67 0.994273
Target:  5'- aGCgCGGAAUUGAA--GGC-CGCGaCGCc -3'
miRNA:   3'- gCG-GUCUUGACUUuaUCGaGUGC-GCG- -5'
9624 3' -50.2 NC_002577.1 + 159779 0.67 0.994273
Target:  5'- aGCgCGGAAUUGAA--GGC-CGCGaCGCc -3'
miRNA:   3'- gCG-GUCUUGACUUuaUCGaGUGC-GCG- -5'
9624 3' -50.2 NC_002577.1 + 95679 0.67 0.994188
Target:  5'- gGCCGGAGa-GAAAUuuagaacgguaucGGCUgcagUACGCGCa -3'
miRNA:   3'- gCGGUCUUgaCUUUA-------------UCGA----GUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 24437 0.67 0.993368
Target:  5'- gCGCCcGuuCUGAGAUcagGGCUUcCGUGCg -3'
miRNA:   3'- -GCGGuCuuGACUUUA---UCGAGuGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 1392 0.67 0.993368
Target:  5'- gGUCGGGGCUaGGAgcGCcCGCGUGCg -3'
miRNA:   3'- gCGGUCUUGAcUUUauCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 132222 0.67 0.993368
Target:  5'- gGUCGGGGCUaGGAgcGCcCGCGUGCg -3'
miRNA:   3'- gCGGUCUUGAcUUUauCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 111633 0.67 0.991684
Target:  5'- uGCCcuAGAAUcGAcauuacacaaauacgGAUGGC-CGCGCGCa -3'
miRNA:   3'- gCGG--UCUUGaCU---------------UUAUCGaGUGCGCG- -5'
9624 3' -50.2 NC_002577.1 + 5300 0.67 0.991214
Target:  5'- -aCCGGGACgGAcagGGCgaCGCGCGCg -3'
miRNA:   3'- gcGGUCUUGaCUuuaUCGa-GUGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.