miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9624 5' -53.9 NC_002577.1 + 50170 0.66 0.959689
Target:  5'- cGugGCCGcuUGCGGaaUAUCGCAGCa- -3'
miRNA:   3'- uCugCGGUu-AUGUCg-GUAGCGUCGag -5'
9624 5' -53.9 NC_002577.1 + 92534 0.66 0.95588
Target:  5'- gAGACGCCA--GCAGCguUcCGuCAGC-Cg -3'
miRNA:   3'- -UCUGCGGUuaUGUCGguA-GC-GUCGaG- -5'
9624 5' -53.9 NC_002577.1 + 156167 0.66 0.95588
Target:  5'- cGGGCGUCGGgggcACGGCCAcgcUCGguGUauUCa -3'
miRNA:   3'- -UCUGCGGUUa---UGUCGGU---AGCguCG--AG- -5'
9624 5' -53.9 NC_002577.1 + 141171 0.66 0.95588
Target:  5'- cGGGCGUCGGgggcACGGCCAcgcUCGguGUauUCa -3'
miRNA:   3'- -UCUGCGGUUa---UGUCGGU---AGCguCG--AG- -5'
9624 5' -53.9 NC_002577.1 + 136564 0.66 0.951834
Target:  5'- gGGGgGCCGGcAUAGCCAgcaaUCGgAGUUCc -3'
miRNA:   3'- -UCUgCGGUUaUGUCGGU----AGCgUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 36299 0.66 0.951834
Target:  5'- cGAUGCaCAAUgcGCGGCgCAUCGCAacGCg- -3'
miRNA:   3'- uCUGCG-GUUA--UGUCG-GUAGCGU--CGag -5'
9624 5' -53.9 NC_002577.1 + 6731 0.66 0.951834
Target:  5'- cGGCcCCGuc-CGGCCAUCGCGaCUCa -3'
miRNA:   3'- uCUGcGGUuauGUCGGUAGCGUcGAG- -5'
9624 5' -53.9 NC_002577.1 + 160774 0.66 0.951834
Target:  5'- gGGGgGCCGGcAUAGCCAgcaaUCGgAGUUCc -3'
miRNA:   3'- -UCUgCGGUUaUGUCGGU----AGCgUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 126883 0.66 0.951834
Target:  5'- cGGCcCCGuc-CGGCCAUCGCGaCUCa -3'
miRNA:   3'- uCUGcGGUuauGUCGGUAGCGUcGAG- -5'
9624 5' -53.9 NC_002577.1 + 94799 0.66 0.951834
Target:  5'- aAGGCGCUA--GCAGCUAcUCGCAucGCg- -3'
miRNA:   3'- -UCUGCGGUuaUGUCGGU-AGCGU--CGag -5'
9624 5' -53.9 NC_002577.1 + 152738 0.66 0.947547
Target:  5'- gGGACGCgGgucuGUAC-GUCGUCGUcGCUCu -3'
miRNA:   3'- -UCUGCGgU----UAUGuCGGUAGCGuCGAG- -5'
9624 5' -53.9 NC_002577.1 + 53086 0.66 0.943015
Target:  5'- aGGGCGCuCAAUGCGGCaUAUU-CGGCUUu -3'
miRNA:   3'- -UCUGCG-GUUAUGUCG-GUAGcGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 128232 0.66 0.941607
Target:  5'- aAGuCGCUAGUcgaaggauggaaucGCAGCgGUCcgaGCGGCUCu -3'
miRNA:   3'- -UCuGCGGUUA--------------UGUCGgUAG---CGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 5382 0.66 0.941607
Target:  5'- aAGuCGCUAGUcgaaggauggaaucGCAGCgGUCcgaGCGGCUCu -3'
miRNA:   3'- -UCuGCGGUUA--------------UGUCGgUAG---CGUCGAG- -5'
9624 5' -53.9 NC_002577.1 + 91576 0.66 0.938235
Target:  5'- uAGACGCgCcGUGCGGCUGgcuaCGguGUUCg -3'
miRNA:   3'- -UCUGCG-GuUAUGUCGGUa---GCguCGAG- -5'
9624 5' -53.9 NC_002577.1 + 159955 0.66 0.938235
Target:  5'- gGGGCGCCGGg--AGCgAacucUCGCGGCUa -3'
miRNA:   3'- -UCUGCGGUUaugUCGgU----AGCGUCGAg -5'
9624 5' -53.9 NC_002577.1 + 33450 0.67 0.935248
Target:  5'- cGAUGCgGucaACAGCCAUUGUcuaaguacgugccauAGCUCg -3'
miRNA:   3'- uCUGCGgUua-UGUCGGUAGCG---------------UCGAG- -5'
9624 5' -53.9 NC_002577.1 + 2639 0.67 0.933206
Target:  5'- uGAUGCCGGaacCAGcCCAUCGCAGa-- -3'
miRNA:   3'- uCUGCGGUUau-GUC-GGUAGCGUCgag -5'
9624 5' -53.9 NC_002577.1 + 130975 0.67 0.933206
Target:  5'- uGAUGCCGGaacCAGcCCAUCGCAGa-- -3'
miRNA:   3'- uCUGCGGUUau-GUC-GGUAGCGUCgag -5'
9624 5' -53.9 NC_002577.1 + 134096 0.67 0.927926
Target:  5'- cGGCGggGAUGCAGCg--UGCGGCUCg -3'
miRNA:   3'- uCUGCggUUAUGUCGguaGCGUCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.