miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9652 5' -56.1 NC_002577.1 + 134797 0.66 0.932581
Target:  5'- gCCGcGCAGGCcUUCGgaaaggacgcggcgaUCUGAguccAGGGGGCc -3'
miRNA:   3'- -GGC-CGUUCGuGAGC---------------AGGCU----UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 162531 0.66 0.932581
Target:  5'- gCCGcGCAGGCcUUCGgaaaggacgcggcgaUCUGAguccAGGGGGCc -3'
miRNA:   3'- -GGC-CGUUCGuGAGC---------------AGGCU----UCCUCCG- -5'
9652 5' -56.1 NC_002577.1 + 126003 0.66 0.923791
Target:  5'- gCGGCGGGaagGCUCcgaGUCCGAccggaaacggaaaaAGGcGGCa -3'
miRNA:   3'- gGCCGUUCg--UGAG---CAGGCU--------------UCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 7611 0.66 0.923791
Target:  5'- gCGGCGGGaagGCUCcgaGUCCGAccggaaacggaaaaAGGcGGCa -3'
miRNA:   3'- gGCCGUUCg--UGAG---CAGGCU--------------UCCuCCG- -5'
9652 5' -56.1 NC_002577.1 + 3068 0.66 0.919978
Target:  5'- cUCGGCGuuGUucgUCGgCCGAGGGuAGGCg -3'
miRNA:   3'- -GGCCGUu-CGug-AGCaGGCUUCC-UCCG- -5'
9652 5' -56.1 NC_002577.1 + 130546 0.66 0.919978
Target:  5'- cUCGGCGuuGUucgUCGgCCGAGGGuAGGCg -3'
miRNA:   3'- -GGCCGUu-CGug-AGCaGGCUUCC-UCCG- -5'
9652 5' -56.1 NC_002577.1 + 3335 0.66 0.919423
Target:  5'- cCCGGUAAaguccagacGCGCgcaguucccuccuUCGUCCGGuguucGAGGCg -3'
miRNA:   3'- -GGCCGUU---------CGUG-------------AGCAGGCUuc---CUCCG- -5'
9652 5' -56.1 NC_002577.1 + 130279 0.66 0.919423
Target:  5'- cCCGGUAAaguccagacGCGCgcaguucccuccuUCGUCCGGuguucGAGGCg -3'
miRNA:   3'- -GGCCGUU---------CGUG-------------AGCAGGCUuc---CUCCG- -5'
9652 5' -56.1 NC_002577.1 + 153475 0.66 0.914334
Target:  5'- cCCGGUggGCACaagCGcUUGcGGGAGGa -3'
miRNA:   3'- -GGCCGuuCGUGa--GCaGGCuUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 1669 0.66 0.914334
Target:  5'- gUGGCAGGUcgaAC-CGUgUGggGGGGGg -3'
miRNA:   3'- gGCCGUUCG---UGaGCAgGCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 131945 0.66 0.914334
Target:  5'- gUGGCAGGUcgaAC-CGUgUGggGGGGGg -3'
miRNA:   3'- gGCCGUUCG---UGaGCAgGCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 162453 0.66 0.912596
Target:  5'- aCGGCAAagucggacggggccGCAC-CGgaUCCGGAGGAG-Cg -3'
miRNA:   3'- gGCCGUU--------------CGUGaGC--AGGCUUCCUCcG- -5'
9652 5' -56.1 NC_002577.1 + 134875 0.66 0.912596
Target:  5'- aCGGCAAagucggacggggccGCAC-CGgaUCCGGAGGAG-Cg -3'
miRNA:   3'- gGCCGUU--------------CGUGaGC--AGGCUUCCUCcG- -5'
9652 5' -56.1 NC_002577.1 + 46930 0.67 0.896032
Target:  5'- uUGGCGGaCAgUCGgucgCCGGAGGAcagcGGCa -3'
miRNA:   3'- gGCCGUUcGUgAGCa---GGCUUCCU----CCG- -5'
9652 5' -56.1 NC_002577.1 + 102011 0.67 0.896032
Target:  5'- aCGGUAucaaAGuCGCUCGgggcCCGAGGGccgaagacguuaGGGCa -3'
miRNA:   3'- gGCCGU----UC-GUGAGCa---GGCUUCC------------UCCG- -5'
9652 5' -56.1 NC_002577.1 + 129038 0.67 0.896032
Target:  5'- aCGGCcgacucuuggGAGCGugcaUCGUUCGggGGucGGCu -3'
miRNA:   3'- gGCCG----------UUCGUg---AGCAGGCuuCCu-CCG- -5'
9652 5' -56.1 NC_002577.1 + 4576 0.67 0.896032
Target:  5'- aCGGCcgacucuuggGAGCGugcaUCGUUCGggGGucGGCu -3'
miRNA:   3'- gGCCG----------UUCGUg---AGCAGGCuuCCu-CCG- -5'
9652 5' -56.1 NC_002577.1 + 135394 0.67 0.889483
Target:  5'- uUCGGCGAGUgaagGCUaagucagGUCgGggGGGGGg -3'
miRNA:   3'- -GGCCGUUCG----UGAg------CAGgCuuCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 139280 0.67 0.882715
Target:  5'- gCCGGCu-GCAgUCGagaCCGcGGGGGGa -3'
miRNA:   3'- -GGCCGuuCGUgAGCa--GGCuUCCUCCg -5'
9652 5' -56.1 NC_002577.1 + 11825 0.67 0.882715
Target:  5'- gCGGuCGGGuCGCgaucgCGUCCGucGGAucGGCg -3'
miRNA:   3'- gGCC-GUUC-GUGa----GCAGGCuuCCU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.