miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9656 5' -58.4 NC_002577.1 + 10102 0.66 0.860502
Target:  5'- cGCCGcGAcGCCgcGGCCCGUCcauGUGGuaauGCGGg -3'
miRNA:   3'- -CGGC-CU-UGG--UCGGGUAG---CGUCu---CGCC- -5'
9656 5' -58.4 NC_002577.1 + 123512 0.66 0.860502
Target:  5'- cGCCGcGAcGCCgcGGCCCGUCcauGUGGuaauGCGGg -3'
miRNA:   3'- -CGGC-CU-UGG--UCGGGUAG---CGUCu---CGCC- -5'
9656 5' -58.4 NC_002577.1 + 138170 0.66 0.852977
Target:  5'- gGCCcGAACCAGCaCCggC-CGGccGGCGGg -3'
miRNA:   3'- -CGGcCUUGGUCG-GGuaGcGUC--UCGCC- -5'
9656 5' -58.4 NC_002577.1 + 159168 0.66 0.852977
Target:  5'- gGCCcGAACCAGCaCCggC-CGGccGGCGGg -3'
miRNA:   3'- -CGGcCUUGGUCG-GGuaGcGUC--UCGCC- -5'
9656 5' -58.4 NC_002577.1 + 160060 0.66 0.845263
Target:  5'- cUCGGAGCCAcGaCCCga-GCAGAGCc- -3'
miRNA:   3'- cGGCCUUGGU-C-GGGuagCGUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 137278 0.66 0.845263
Target:  5'- cUCGGAGCCAcGaCCCga-GCAGAGCc- -3'
miRNA:   3'- cGGCCUUGGU-C-GGGuagCGUCUCGcc -5'
9656 5' -58.4 NC_002577.1 + 156879 0.66 0.837367
Target:  5'- uCCGGAGcgaccgagucCCAGCCCGcCGUAaaucGAGCGu -3'
miRNA:   3'- cGGCCUU----------GGUCGGGUaGCGU----CUCGCc -5'
9656 5' -58.4 NC_002577.1 + 140458 0.66 0.837367
Target:  5'- uCCGGAGcgaccgagucCCAGCCCGcCGUAaaucGAGCGu -3'
miRNA:   3'- cGGCCUU----------GGUCGGGUaGCGU----CUCGCc -5'
9656 5' -58.4 NC_002577.1 + 124246 0.66 0.832544
Target:  5'- -gCGGAGCCGcGCCCGggacgCGUcguuucuugcgaaacGGGGUGGa -3'
miRNA:   3'- cgGCCUUGGU-CGGGUa----GCG---------------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 9368 0.66 0.832544
Target:  5'- -gCGGAGCCGcGCCCGggacgCGUcguuucuugcgaaacGGGGUGGa -3'
miRNA:   3'- cgGCCUUGGU-CGGGUa----GCG---------------UCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 156962 0.66 0.829294
Target:  5'- uCCGGGGaaagaGGCCUGUCGUGGAGaGGg -3'
miRNA:   3'- cGGCCUUgg---UCGGGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 140376 0.66 0.829294
Target:  5'- uCCGGGGaaagaGGCCUGUCGUGGAGaGGg -3'
miRNA:   3'- cGGCCUUgg---UCGGGUAGCGUCUCgCC- -5'
9656 5' -58.4 NC_002577.1 + 1178 0.66 0.821052
Target:  5'- cGCCGGGAgaCGGCggcuUCAUCGCGcacGCGGg -3'
miRNA:   3'- -CGGCCUUg-GUCG----GGUAGCGUcu-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 132435 0.66 0.821052
Target:  5'- cGCCGGGAgaCGGCggcuUCAUCGCGcacGCGGg -3'
miRNA:   3'- -CGGCCUUg-GUCG----GGUAGCGUcu-CGCC- -5'
9656 5' -58.4 NC_002577.1 + 28034 0.67 0.812648
Target:  5'- aUCGGGA-CGGUCUAUCGCgAGAGCuuGGg -3'
miRNA:   3'- cGGCCUUgGUCGGGUAGCG-UCUCG--CC- -5'
9656 5' -58.4 NC_002577.1 + 134053 0.67 0.804089
Target:  5'- uCCGGGcgGCCuagcgagcGCCCG-CGCGGccGGCGGg -3'
miRNA:   3'- cGGCCU--UGGu-------CGGGUaGCGUC--UCGCC- -5'
9656 5' -58.4 NC_002577.1 + 16556 0.67 0.804089
Target:  5'- aGCCGGAGCCgaAGUCgGUCuGgAGAcCGGa -3'
miRNA:   3'- -CGGCCUUGG--UCGGgUAG-CgUCUcGCC- -5'
9656 5' -58.4 NC_002577.1 + 161028 0.67 0.795383
Target:  5'- cGCCuGGGCgGGCCgGUgG-AGAGCGGc -3'
miRNA:   3'- -CGGcCUUGgUCGGgUAgCgUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 8248 0.67 0.795383
Target:  5'- -aCGGAgagacccgcccGCCAGCCUcUCcggccCGGAGCGGa -3'
miRNA:   3'- cgGCCU-----------UGGUCGGGuAGc----GUCUCGCC- -5'
9656 5' -58.4 NC_002577.1 + 125366 0.67 0.795383
Target:  5'- -aCGGAgagacccgcccGCCAGCCUcUCcggccCGGAGCGGa -3'
miRNA:   3'- cgGCCU-----------UGGUCGGGuAGc----GUCUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.