miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9764 5' -63.4 NC_002577.1 + 160146 0.66 0.587762
Target:  5'- -----aGCCGCGAgaguuCGCuCCCGGCGCc- -3'
miRNA:   3'- aacuucCGGCGCU-----GCG-GGGCCGCGug -5'
9764 5' -63.4 NC_002577.1 + 137718 0.66 0.587762
Target:  5'- -gGAGGGCCuGCugGACGUCCCcgaauaccgauuGGuCGCGCc -3'
miRNA:   3'- aaCUUCCGG-CG--CUGCGGGG------------CC-GCGUG- -5'
9764 5' -63.4 NC_002577.1 + 159620 0.66 0.587762
Target:  5'- -gGAGGGCCuGCugGACGUCCCcgaauaccgauuGGuCGCGCc -3'
miRNA:   3'- aaCUUCCGG-CG--CUGCGGGG------------CC-GCGUG- -5'
9764 5' -63.4 NC_002577.1 + 76428 0.66 0.578023
Target:  5'- -aGcAGGCgGCGGuCGggagUCCGGCGCACg -3'
miRNA:   3'- aaCuUCCGgCGCU-GCg---GGGCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 119072 0.66 0.577051
Target:  5'- -aGAcGGCCGUGACGCacaccacgugCCGGUacauuagGCACg -3'
miRNA:   3'- aaCUuCCGGCGCUGCGg---------GGCCG-------CGUG- -5'
9764 5' -63.4 NC_002577.1 + 137406 0.66 0.56832
Target:  5'- -aGAAGcGCCGCcACGaCCCCcuCGCACu -3'
miRNA:   3'- aaCUUC-CGGCGcUGC-GGGGccGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 159932 0.66 0.56832
Target:  5'- -aGAAGcGCCGCcACGaCCCCcuCGCACu -3'
miRNA:   3'- aaCUUC-CGGCGcUGC-GGGGccGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 106442 0.66 0.56832
Target:  5'- -gGcGGGUCagaGACGCCCCGGCGa-- -3'
miRNA:   3'- aaCuUCCGGcg-CUGCGGGGCCGCgug -5'
9764 5' -63.4 NC_002577.1 + 44885 0.66 0.56832
Target:  5'- cUGuGGGGCUGUGACcCCCUGauguaucaaGCGCACg -3'
miRNA:   3'- aAC-UUCCGGCGCUGcGGGGC---------CGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 143139 0.66 0.56832
Target:  5'- gUGcucGCCGC-ACGCCCCGGUcccacacuagGCGCa -3'
miRNA:   3'- aACuucCGGCGcUGCGGGGCCG----------CGUG- -5'
9764 5' -63.4 NC_002577.1 + 80527 0.66 0.56832
Target:  5'- --uAAGGCaCGCgGAUGCCCgCGGCGgGa -3'
miRNA:   3'- aacUUCCG-GCG-CUGCGGG-GCCGCgUg -5'
9764 5' -63.4 NC_002577.1 + 8299 0.66 0.558658
Target:  5'- -----cGCUGCGGCGUUuaGGCGCGCa -3'
miRNA:   3'- aacuucCGGCGCUGCGGggCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 78385 0.66 0.558658
Target:  5'- -gGAaaAGGUCaaGACguGCCCCGGCauGCACg -3'
miRNA:   3'- aaCU--UCCGGcgCUG--CGGGGCCG--CGUG- -5'
9764 5' -63.4 NC_002577.1 + 125315 0.66 0.558658
Target:  5'- -----cGCUGCGGCGUUuaGGCGCGCa -3'
miRNA:   3'- aacuucCGGCGCUGCGGggCCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 4403 0.66 0.549043
Target:  5'- -aGucGGCCGUaggagagcacGCGCCCCcccauacucGGCGCGCg -3'
miRNA:   3'- aaCuuCCGGCGc---------UGCGGGG---------CCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 129211 0.66 0.549043
Target:  5'- -aGucGGCCGUaggagagcacGCGCCCCcccauacucGGCGCGCg -3'
miRNA:   3'- aaCuuCCGGCGc---------UGCGGGG---------CCGCGUG- -5'
9764 5' -63.4 NC_002577.1 + 135079 0.66 0.549043
Target:  5'- -aGAAGcGCCgGCGA-GCCCgCGG-GCGCg -3'
miRNA:   3'- aaCUUC-CGG-CGCUgCGGG-GCCgCGUG- -5'
9764 5' -63.4 NC_002577.1 + 162249 0.66 0.549043
Target:  5'- -aGAAGcGCCgGCGA-GCCCgCGG-GCGCg -3'
miRNA:   3'- aaCUUC-CGG-CGCUgCGGG-GCCgCGUG- -5'
9764 5' -63.4 NC_002577.1 + 138114 0.66 0.539481
Target:  5'- -cGgcGGCCuGCucuacuucaggGAUGCCCCGGaGCGCc -3'
miRNA:   3'- aaCuuCCGG-CG-----------CUGCGGGGCCgCGUG- -5'
9764 5' -63.4 NC_002577.1 + 159224 0.66 0.539481
Target:  5'- -cGgcGGCCuGCucuacuucaggGAUGCCCCGGaGCGCc -3'
miRNA:   3'- aaCuuCCGG-CG-----------CUGCGGGGCCgCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.