miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9766 3' -66.4 NC_002577.1 + 18790 0.66 0.506262
Target:  5'- --cACCCGCGCCgUGGacggaacuacgcaucCGGUGGUGCcCg -3'
miRNA:   3'- ucaUGGGCGCGG-GCC---------------GCCGCCGCGcG- -5'
9766 3' -66.4 NC_002577.1 + 137379 0.66 0.502683
Target:  5'- ----aCCGCGCCCGGacCGuCGGgucCGCGCa -3'
miRNA:   3'- ucaugGGCGCGGGCC--GCcGCC---GCGCG- -5'
9766 3' -66.4 NC_002577.1 + 159959 0.66 0.502683
Target:  5'- ----aCCGCGCCCGGacCGuCGGgucCGCGCa -3'
miRNA:   3'- ucaugGGCGCGGGCC--GCcGCC---GCGCG- -5'
9766 3' -66.4 NC_002577.1 + 153379 0.66 0.484958
Target:  5'- cGUACCgCGCGCCaauuuucGUGuaGGUGUGCg -3'
miRNA:   3'- uCAUGG-GCGCGGgc-----CGCcgCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 159450 0.66 0.484958
Target:  5'- cGUGacggCCGCGCCCGGCGaaCuGUGCGa -3'
miRNA:   3'- uCAUg---GGCGCGGGCCGCc-GcCGCGCg -5'
9766 3' -66.4 NC_002577.1 + 137887 0.66 0.484958
Target:  5'- cGUGacggCCGCGCCCGGCGaaCuGUGCGa -3'
miRNA:   3'- uCAUg---GGCGCGGGCCGCc-GcCGCGCg -5'
9766 3' -66.4 NC_002577.1 + 89168 0.66 0.476209
Target:  5'- -aUGCCCGUGgguCCCGucCGGCaGGUGUGCu -3'
miRNA:   3'- ucAUGGGCGC---GGGCc-GCCG-CCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 8138 0.66 0.476209
Target:  5'- -cUGCCCGCGCCCG-CG-CucCGCGCu -3'
miRNA:   3'- ucAUGGGCGCGGGCcGCcGccGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 62213 0.66 0.476209
Target:  5'- uGGUcCCCuaUGCCaggaCGGCGaCGGCGCGCc -3'
miRNA:   3'- -UCAuGGGc-GCGG----GCCGCcGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 125476 0.66 0.476209
Target:  5'- -cUGCCCGCGCCCG-CG-CucCGCGCu -3'
miRNA:   3'- ucAUGGGCGCGGGCcGCcGccGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 140315 0.66 0.473599
Target:  5'- uGGUgGCCCGCcagCCGGgGagccacgcuauguuGUGGCGCGCg -3'
miRNA:   3'- -UCA-UGGGCGcg-GGCCgC--------------CGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 157023 0.66 0.473599
Target:  5'- uGGUgGCCCGCcagCCGGgGagccacgcuauguuGUGGCGCGCg -3'
miRNA:   3'- -UCA-UGGGCGcg-GGCCgC--------------CGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 38158 0.66 0.458949
Target:  5'- --cGCCCGCGCCagaGGCcaauugaacucGGCgccGGCauGCGCu -3'
miRNA:   3'- ucaUGGGCGCGGg--CCG-----------CCG---CCG--CGCG- -5'
9766 3' -66.4 NC_002577.1 + 97725 0.66 0.458949
Target:  5'- ---gUCCGUGCUgGGCGGgagacGCGCGCg -3'
miRNA:   3'- ucauGGGCGCGGgCCGCCgc---CGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 4834 0.67 0.450446
Target:  5'- aAGUACUgCGCGCaaGGaccgaGGCGGCGUu- -3'
miRNA:   3'- -UCAUGG-GCGCGggCCg----CCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 128779 0.67 0.450446
Target:  5'- aAGUACUgCGCGCaaGGaccgaGGCGGCGUu- -3'
miRNA:   3'- -UCAUGG-GCGCGggCCg----CCGCCGCGcg -5'
9766 3' -66.4 NC_002577.1 + 128578 0.67 0.450446
Target:  5'- --cGCgCCGUGUCCccccuCGGCGGUGUGCa -3'
miRNA:   3'- ucaUG-GGCGCGGGcc---GCCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 5036 0.67 0.450446
Target:  5'- --cGCgCCGUGUCCccccuCGGCGGUGUGCa -3'
miRNA:   3'- ucaUG-GGCGCGGGcc---GCCGCCGCGCG- -5'
9766 3' -66.4 NC_002577.1 + 38542 0.67 0.433702
Target:  5'- --cAUuuGuCGCCCGGCGGgcCGGCGaCGa -3'
miRNA:   3'- ucaUGggC-GCGGGCCGCC--GCCGC-GCg -5'
9766 3' -66.4 NC_002577.1 + 134126 0.67 0.432874
Target:  5'- -cUGgCCGCGCggagccgCCGGCGGuCGGCGgucuaaCGCu -3'
miRNA:   3'- ucAUgGGCGCG-------GGCCGCC-GCCGC------GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.