miRNA display CGI


Results 1 - 20 of 92 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9768 5' -54.8 NC_002577.1 + 162926 0.69 0.855203
Target:  5'- cUAUCCGuucgagauGACCUUCaCGGAGCGGaGCUCg -3'
miRNA:   3'- -AUAGGC--------UUGGGAG-GCUUUGCCgUGGG- -5'
9768 5' -54.8 NC_002577.1 + 162658 0.67 0.916378
Target:  5'- --aCCGc-UCCUCCGGAuccgguGCGGC-CCCg -3'
miRNA:   3'- auaGGCuuGGGAGGCUU------UGCCGuGGG- -5'
9768 5' -54.8 NC_002577.1 + 162476 0.66 0.954523
Target:  5'- --aCCGGAUCCggaGGAGCGGUuuccgcaGCCCu -3'
miRNA:   3'- auaGGCUUGGGaggCUUUGCCG-------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 161226 0.71 0.77236
Target:  5'- cGUCCGGcgccgcucuccaccgGCCCgCCcAGGCGGCGCUCu -3'
miRNA:   3'- aUAGGCU---------------UGGGaGGcUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 159666 0.77 0.416256
Target:  5'- cGUCCGGAcauCCCUCCGggGaCGGUuucgcgucuACCCg -3'
miRNA:   3'- aUAGGCUU---GGGAGGCuuU-GCCG---------UGGG- -5'
9768 5' -54.8 NC_002577.1 + 159104 0.67 0.934108
Target:  5'- cAUCCGGcgguggcggcgcagcAgUUUCCGAggacgguGAUGGCGCCCg -3'
miRNA:   3'- aUAGGCU---------------UgGGAGGCU-------UUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 158407 0.67 0.932603
Target:  5'- -cUCCGucAGCCgUCCGgcGCGagggacgacggaGCGCCCa -3'
miRNA:   3'- auAGGC--UUGGgAGGCuuUGC------------CGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 158203 0.66 0.958682
Target:  5'- aAUCCgGAACCCggCGGGAC-GC-CCCa -3'
miRNA:   3'- aUAGG-CUUGGGagGCUUUGcCGuGGG- -5'
9768 5' -54.8 NC_002577.1 + 157971 0.67 0.932603
Target:  5'- --cCCGAACCC-CUGGAcCGGgcuCACCUg -3'
miRNA:   3'- auaGGCUUGGGaGGCUUuGCC---GUGGG- -5'
9768 5' -54.8 NC_002577.1 + 157414 0.66 0.950916
Target:  5'- aGUUCGAuagACCCcggugaggUCCGcAGAgGGCugCCg -3'
miRNA:   3'- aUAGGCU---UGGG--------AGGC-UUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 157342 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5'
9768 5' -54.8 NC_002577.1 + 156287 1.09 0.00404
Target:  5'- gAUCCGAACCCUCCGAAACGGCACCCu -3'
miRNA:   3'- aUAGGCUUGGGAGGCUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 156138 0.73 0.659788
Target:  5'- --gCCGAACCCcCCGA--CGGCGCgCa -3'
miRNA:   3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 155985 0.66 0.958682
Target:  5'- --gCCGuGCCC-CCGAcgcccgguCGGCAgCCCg -3'
miRNA:   3'- auaGGCuUGGGaGGCUuu------GCCGU-GGG- -5'
9768 5' -54.8 NC_002577.1 + 154677 0.7 0.813956
Target:  5'- -cUCCGAGCCgaaUCaGAAGgGGCugCCg -3'
miRNA:   3'- auAGGCUUGGg--AGgCUUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 142660 0.69 0.847329
Target:  5'- -cUCCGAGCCgaaUCgaGAAGgGGCugCCg -3'
miRNA:   3'- auAGGCUUGGg--AGg-CUUUgCCGugGG- -5'
9768 5' -54.8 NC_002577.1 + 141352 0.66 0.958682
Target:  5'- --gCCGuGCCC-CCGAcgcccgguCGGCAgCCCg -3'
miRNA:   3'- auaGGCuUGGGaGGCUuu------GCCGU-GGG- -5'
9768 5' -54.8 NC_002577.1 + 141200 0.73 0.659788
Target:  5'- --gCCGAACCCcCCGA--CGGCGCgCa -3'
miRNA:   3'- auaGGCUUGGGaGGCUuuGCCGUGgG- -5'
9768 5' -54.8 NC_002577.1 + 141050 1.1 0.003615
Target:  5'- gUAUCCGAACCCUCCGAAACGGCACCCu -3'
miRNA:   3'- -AUAGGCUUGGGAGGCUUUGCCGUGGG- -5'
9768 5' -54.8 NC_002577.1 + 139996 0.66 0.936081
Target:  5'- --cCCGuGCCCUCCGAacgagcuggggaauGACugGGCGgCCu -3'
miRNA:   3'- auaGGCuUGGGAGGCU--------------UUG--CCGUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.