miRNA display CGI


Results 1 - 20 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9774 3' -68.4 NC_002577.1 + 162551 0.66 0.414604
Target:  5'- --cGCcgCCGCUCCUCCUCCUCGUacaggCCaCGg -3'
miRNA:   3'- ucaCG--GGCGAGGGGGAGGGGCG-----GG-GC- -5'
9774 3' -68.4 NC_002577.1 + 134776 0.66 0.414604
Target:  5'- --cGCcgCCGCUCCUCCUCCUCGUacaggCCaCGg -3'
miRNA:   3'- ucaCG--GGCGAGGGGGAGGGGCG-----GG-GC- -5'
9774 3' -68.4 NC_002577.1 + 5110 0.66 0.406659
Target:  5'- --cGCgCGCgUCgCCCUgUCCGUCCCGg -3'
miRNA:   3'- ucaCGgGCG-AGgGGGAgGGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 128503 0.66 0.406659
Target:  5'- --cGCgCGCgUCgCCCUgUCCGUCCCGg -3'
miRNA:   3'- ucaCGgGCG-AGgGGGAgGGGCGGGGC- -5'
9774 3' -68.4 NC_002577.1 + 127491 0.66 0.391058
Target:  5'- --aGCCU--UCCCCCUCCCCcCUCCc -3'
miRNA:   3'- ucaCGGGcgAGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 6122 0.66 0.391058
Target:  5'- --aGCCU--UCCCCCUCCCCcCUCCc -3'
miRNA:   3'- ucaCGGGcgAGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 6083 0.66 0.391058
Target:  5'- --aGCCU--UCCCCCUCCCCcCUCCc -3'
miRNA:   3'- ucaCGGGcgAGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 127530 0.66 0.391058
Target:  5'- --aGCCU--UCCCCCUCCCCcCUCCc -3'
miRNA:   3'- ucaCGGGcgAGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 7148 0.66 0.383406
Target:  5'- ---cCCCcCcCCCCCUCCCCcCCCCa -3'
miRNA:   3'- ucacGGGcGaGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 126465 0.66 0.383406
Target:  5'- ---cCCCcCcCCCCCUCCCCcCCCCa -3'
miRNA:   3'- ucacGGGcGaGGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 135439 0.67 0.353807
Target:  5'- -cUGCCCGgUCCUCCUucgCCCUugGCCCUc -3'
miRNA:   3'- ucACGGGCgAGGGGGA---GGGG--CGGGGc -5'
9774 3' -68.4 NC_002577.1 + 161898 0.67 0.353807
Target:  5'- -cUGCCCGgUCCUCCUucgCCCUugGCCCUc -3'
miRNA:   3'- ucACGGGCgAGGGGGA---GGGG--CGGGGc -5'
9774 3' -68.4 NC_002577.1 + 158438 0.67 0.346664
Target:  5'- gAGcGCCCauGUUuccCCCCCUUCCCGUUCCa -3'
miRNA:   3'- -UCaCGGG--CGA---GGGGGAGGGGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 138900 0.67 0.346664
Target:  5'- gAGcGCCCauGUUuccCCCCCUUCCCGUUCCa -3'
miRNA:   3'- -UCaCGGG--CGA---GGGGGAGGGGCGGGGc -5'
9774 3' -68.4 NC_002577.1 + 9713 0.67 0.32586
Target:  5'- --gGCCgGCUauuuccCUCCCUCCCCcCCCCc -3'
miRNA:   3'- ucaCGGgCGA------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 123900 0.67 0.32586
Target:  5'- --gGCCgGCUauuuccCUCCCUCCCCcCCCCc -3'
miRNA:   3'- ucaCGGgCGA------GGGGGAGGGGcGGGGc -5'
9774 3' -68.4 NC_002577.1 + 8237 0.67 0.32586
Target:  5'- --cGCCCGC-CagCCUCUCCGgCCCGg -3'
miRNA:   3'- ucaCGGGCGaGggGGAGGGGCgGGGC- -5'
9774 3' -68.4 NC_002577.1 + 125377 0.67 0.32586
Target:  5'- --cGCCCGC-CagCCUCUCCGgCCCGg -3'
miRNA:   3'- ucaCGGGCGaGggGGAGGGGCgGGGC- -5'
9774 3' -68.4 NC_002577.1 + 105786 0.67 0.319134
Target:  5'- --aGCCgGCcgCUCUCUCCCCGCgCUGa -3'
miRNA:   3'- ucaCGGgCGa-GGGGGAGGGGCGgGGC- -5'
9774 3' -68.4 NC_002577.1 + 163154 0.68 0.312513
Target:  5'- --cGCCCcC-CCCCC-CCCC-CCCCGa -3'
miRNA:   3'- ucaCGGGcGaGGGGGaGGGGcGGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.