miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9775 3' -53.9 NC_002577.1 + 156179 0.66 0.974068
Target:  5'- cGgGCUGCcGAcCGGgcGUCgGGGGCa -3'
miRNA:   3'- cCgCGACGcCUuGCCuuUAGgCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 101378 0.66 0.974068
Target:  5'- cGGUGUcGgGGAGCGGAGAUaaguuaGcGAGCa -3'
miRNA:   3'- -CCGCGaCgCCUUGCCUUUAgg----C-CUUG- -5'
9775 3' -53.9 NC_002577.1 + 141159 0.66 0.974068
Target:  5'- cGgGCUGCcGAcCGGgcGUCgGGGGCa -3'
miRNA:   3'- cCgCGACGcCUuGCCuuUAGgCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 126960 0.66 0.971324
Target:  5'- aGGCGUggGgGGGGgGGGAggCCuGAACg -3'
miRNA:   3'- -CCGCGa-CgCCUUgCCUUuaGGcCUUG- -5'
9775 3' -53.9 NC_002577.1 + 129107 0.66 0.971324
Target:  5'- cGGUGCUguuauuuucgGCGGGgcGCGGGAcuucGUCCuGGGCc -3'
miRNA:   3'- -CCGCGA----------CGCCU--UGCCUU----UAGGcCUUG- -5'
9775 3' -53.9 NC_002577.1 + 6653 0.66 0.971324
Target:  5'- aGGCGUggGgGGGGgGGGAggCCuGAACg -3'
miRNA:   3'- -CCGCGa-CgCCUUgCCUUuaGGcCUUG- -5'
9775 3' -53.9 NC_002577.1 + 4507 0.66 0.971324
Target:  5'- cGGUGCUguuauuuucgGCGGGgcGCGGGAcuucGUCCuGGGCc -3'
miRNA:   3'- -CCGCGA----------CGCCU--UGCCUU----UAGGcCUUG- -5'
9775 3' -53.9 NC_002577.1 + 46320 0.66 0.970462
Target:  5'- cGUGCUGCGcGAaagggguaucaguaGCGGAGucggCGGAGCc -3'
miRNA:   3'- cCGCGACGC-CU--------------UGCCUUuag-GCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 156837 0.66 0.965222
Target:  5'- aGGCGUggGgGGAGgGGAAccGUgCGGAGg -3'
miRNA:   3'- -CCGCGa-CgCCUUgCCUU--UAgGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 140501 0.66 0.965222
Target:  5'- aGGCGUggGgGGAGgGGAAccGUgCGGAGg -3'
miRNA:   3'- -CCGCGa-CgCCUUgCCUU--UAgGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 16673 0.66 0.961852
Target:  5'- cGCGCUGCGcAAUGG----UCGGGGCa -3'
miRNA:   3'- cCGCGACGCcUUGCCuuuaGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 158988 0.66 0.961503
Target:  5'- cGGUGCUGguuCGGGccucucgGCGGAcAccgacaggcgcUCCGGGGCa -3'
miRNA:   3'- -CCGCGAC---GCCU-------UGCCUuU-----------AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 18794 0.67 0.946124
Target:  5'- cGCGCcGUGG-ACGGAAcuacgcAUCCGGugguGCc -3'
miRNA:   3'- cCGCGaCGCCuUGCCUU------UAGGCCu---UG- -5'
9775 3' -53.9 NC_002577.1 + 130002 0.67 0.946124
Target:  5'- gGGCGCgaaGCGGc-UGGGAAUCgGGucGCg -3'
miRNA:   3'- -CCGCGa--CGCCuuGCCUUUAGgCCu-UG- -5'
9775 3' -53.9 NC_002577.1 + 138349 0.67 0.941147
Target:  5'- cGGUGCUGguuCGGGccucucgGCGGAAccgacaggcgcUCCGGGGCa -3'
miRNA:   3'- -CCGCGAC---GCCU-------UGCCUUu----------AGGCCUUG- -5'
9775 3' -53.9 NC_002577.1 + 125112 0.67 0.936861
Target:  5'- cGCGCgGcCGGGACGGGAuUCCuGAu- -3'
miRNA:   3'- cCGCGaC-GCCUUGCCUUuAGGcCUug -5'
9775 3' -53.9 NC_002577.1 + 8502 0.67 0.936861
Target:  5'- cGCGCgGcCGGGACGGGAuUCCuGAu- -3'
miRNA:   3'- cCGCGaC-GCCUUGCCUUuAGGcCUug -5'
9775 3' -53.9 NC_002577.1 + 13731 0.67 0.936861
Target:  5'- cGGCGaccCUGCGGAagACGG---UUCGGAAa -3'
miRNA:   3'- -CCGC---GACGCCU--UGCCuuuAGGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 46922 0.68 0.93187
Target:  5'- cGGUGCgauugGCGGAcaguCGGucg-CCGGAGg -3'
miRNA:   3'- -CCGCGa----CGCCUu---GCCuuuaGGCCUUg -5'
9775 3' -53.9 NC_002577.1 + 81400 0.68 0.926639
Target:  5'- cGGCGCUGCaGAACGccguAUCCGauguaaacaGGGCg -3'
miRNA:   3'- -CCGCGACGcCUUGCcuu-UAGGC---------CUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.