miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9779 5' -49.3 NC_002577.1 + 2246 0.66 0.999393
Target:  5'- aGggGCAGgGUUagGGU-CAGGGUCGg -3'
miRNA:   3'- cCuuCGUUgCAGg-CUAuGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 90418 0.66 0.999393
Target:  5'- aGGAAGCuACuUuuGAUGCGuGGUUGa -3'
miRNA:   3'- -CCUUCGuUGcAggCUAUGUuCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 131368 0.66 0.999393
Target:  5'- aGggGCAGgGUUagGGU-CAGGGUCGg -3'
miRNA:   3'- cCuuCGUUgCAGg-CUAuGUUCCAGCg -5'
9779 5' -49.3 NC_002577.1 + 122612 0.66 0.999205
Target:  5'- gGGAAGCGAucgcgcgcCGUcCCGAgaacgucgucUACGgcucgcguucgcggGGGUCGCc -3'
miRNA:   3'- -CCUUCGUU--------GCA-GGCU----------AUGU--------------UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 11002 0.66 0.999205
Target:  5'- gGGAAGCGAucgcgcgcCGUcCCGAgaacgucgucUACGgcucgcguucgcggGGGUCGCc -3'
miRNA:   3'- -CCUUCGUU--------GCA-GGCU----------AUGU--------------UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 144072 0.66 0.999084
Target:  5'- aGGAGUAcACGgacUCGGUugGuGGUCGCa -3'
miRNA:   3'- cCUUCGU-UGCa--GGCUAugUuCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 3612 0.66 0.999084
Target:  5'- cGGgcGCGaaGCGgCUGggAUcGGGUCGCg -3'
miRNA:   3'- -CCuuCGU--UGCaGGCuaUGuUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 119877 0.66 0.998884
Target:  5'- cGGGuucCAACGUCCacgucccAUACAuAGGUUGCg -3'
miRNA:   3'- -CCUuc-GUUGCAGGc------UAUGU-UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 157456 0.66 0.998648
Target:  5'- cGGGGaaAGCGUCUuaGAaucGCAGGGUUGCg -3'
miRNA:   3'- -CCUUcgUUGCAGG--CUa--UGUUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 152656 0.66 0.998648
Target:  5'- cGAGGuCGACGaaUCGAUGCAgcaaAGGuUCGCa -3'
miRNA:   3'- cCUUC-GUUGCa-GGCUAUGU----UCC-AGCG- -5'
9779 5' -49.3 NC_002577.1 + 13942 0.66 0.998648
Target:  5'- aGGGAGUAuuCGcaugcauguuUCCGAaccgucuuccGCAGGGUCGCc -3'
miRNA:   3'- -CCUUCGUu-GC----------AGGCUa---------UGUUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 139882 0.66 0.998648
Target:  5'- cGGGGaaAGCGUCUuaGAaucGCAGGGUUGCg -3'
miRNA:   3'- -CCUUcgUUGCAGG--CUa--UGUUCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 159766 0.67 0.998371
Target:  5'- aGGccGCGACGccCCGGcGCAcgcGGUCGUg -3'
miRNA:   3'- -CCuuCGUUGCa-GGCUaUGUu--CCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 137572 0.67 0.998371
Target:  5'- aGGccGCGACGccCCGGcGCAcgcGGUCGUg -3'
miRNA:   3'- -CCuuCGUUGCa-GGCUaUGUu--CCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 140017 0.67 0.99815
Target:  5'- aGGAagGGCAccggcgaGCGUCCGAcaacGCGaggagaaaaaccuuaGGGUCGUc -3'
miRNA:   3'- -CCU--UCGU-------UGCAGGCUa---UGU---------------UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 157320 0.67 0.997904
Target:  5'- aGGAagGGCAccggcgaGCGUCCGAcaacGCGaggaaaaaaccuuaGGGUCGUc -3'
miRNA:   3'- -CCU--UCGU-------UGCAGGCUa---UGU--------------UCCAGCG- -5'
9779 5' -49.3 NC_002577.1 + 37604 0.67 0.997672
Target:  5'- aGGuucuauGGCGACGUCCGGaagaccgaUACA-GGUCc- -3'
miRNA:   3'- -CCu-----UCGUUGCAGGCU--------AUGUuCCAGcg -5'
9779 5' -49.3 NC_002577.1 + 136233 0.67 0.997672
Target:  5'- gGGggGCGAgcCGggcgCCGGUACGcaaaacAGGugcUCGCc -3'
miRNA:   3'- -CCuuCGUU--GCa---GGCUAUGU------UCC---AGCG- -5'
9779 5' -49.3 NC_002577.1 + 161105 0.67 0.997672
Target:  5'- gGGggGCGAgcCGggcgCCGGUACGcaaaacAGGugcUCGCc -3'
miRNA:   3'- -CCuuCGUU--GCa---GGCUAUGU------UCC---AGCG- -5'
9779 5' -49.3 NC_002577.1 + 46949 0.67 0.997672
Target:  5'- cGGAGGaCAGCGgcaUCCGGc-CAuGGUCGUc -3'
miRNA:   3'- -CCUUC-GUUGC---AGGCUauGUuCCAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.