miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
9936 5' -52.6 NC_002641.1 + 133442 0.66 0.984719
Target:  5'- aUCgCGGgaGCUCGGauuuguagCGCCGCGGGCa -3'
miRNA:   3'- -AG-GUUggUGAGUUgua-----GUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 153421 0.66 0.984719
Target:  5'- gCCucGCCGCUUGcCAgugggaaaagUGCCGCGGGCu -3'
miRNA:   3'- aGGu-UGGUGAGUuGUa---------GUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 149030 0.66 0.984719
Target:  5'- aUCgCGGgaGCUCGGauuuguagCGCCGCGGGCa -3'
miRNA:   3'- -AG-GUUggUGAGUUgua-----GUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 117931 0.66 0.984719
Target:  5'- gUCCGGCCGCgcccaGACAgggcggagacgUGCCACagGGGCu -3'
miRNA:   3'- -AGGUUGGUGag---UUGUa----------GUGGUG--CCCG- -5'
9936 5' -52.6 NC_002641.1 + 5791 0.66 0.984719
Target:  5'- gUCCGGCCGCgcccaGACAgggcggagacgUGCCACagGGGCu -3'
miRNA:   3'- -AGGUUGGUGag---UUGUa----------GUGGUG--CCCG- -5'
9936 5' -52.6 NC_002641.1 + 129052 0.66 0.984719
Target:  5'- gCCucGCCGCUUGcCAgugggaaaagUGCCGCGGGCu -3'
miRNA:   3'- aGGu-UGGUGAGUuGUa---------GUGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 31039 0.66 0.982024
Target:  5'- aUCCAGCCAUaauacCAAUGUaaguaguuacuuaGCCACGuGGCg -3'
miRNA:   3'- -AGGUUGGUGa----GUUGUAg------------UGGUGC-CCG- -5'
9936 5' -52.6 NC_002641.1 + 95616 0.66 0.980765
Target:  5'- -aCAGCCACauUCGACAcgaUCGCCuaauugaugugUGGGCg -3'
miRNA:   3'- agGUUGGUG--AGUUGU---AGUGGu----------GCCCG- -5'
9936 5' -52.6 NC_002641.1 + 152418 0.66 0.979442
Target:  5'- aUCCGGCCug-CAAgacaacaggaauuccCGUCcCCACGGGUc -3'
miRNA:   3'- -AGGUUGGugaGUU---------------GUAGuGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 130055 0.66 0.979442
Target:  5'- aUCCGGCCug-CAAgacaacaggaauuccCGUCcCCACGGGUc -3'
miRNA:   3'- -AGGUUGGugaGUU---------------GUAGuGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 116985 0.66 0.978522
Target:  5'- cCCGcACCGCccguaCGACAUCGCCuCGGacGCg -3'
miRNA:   3'- aGGU-UGGUGa----GUUGUAGUGGuGCC--CG- -5'
9936 5' -52.6 NC_002641.1 + 6082 0.66 0.978522
Target:  5'- cCCGcACCGCccguaCGACAUCGCCuCGGacGCg -3'
miRNA:   3'- aGGU-UGGUGa----GUUGUAGUGGuGCC--CG- -5'
9936 5' -52.6 NC_002641.1 + 129371 0.66 0.978522
Target:  5'- cUCCGACgGaUCucCAUCGgCugGGGCc -3'
miRNA:   3'- -AGGUUGgUgAGuuGUAGUgGugCCCG- -5'
9936 5' -52.6 NC_002641.1 + 153101 0.66 0.978522
Target:  5'- cUCCGACgGaUCucCAUCGgCugGGGCc -3'
miRNA:   3'- -AGGUUGgUgAGuuGUAGUgGugCCCG- -5'
9936 5' -52.6 NC_002641.1 + 85941 0.66 0.976092
Target:  5'- aUCCGGCaa--UAGCAUCGCCcUGGGUg -3'
miRNA:   3'- -AGGUUGgugaGUUGUAGUGGuGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 157252 0.67 0.973467
Target:  5'- gCCaAGCCGCUUGGCcgCAgCGCuGGCc -3'
miRNA:   3'- aGG-UUGGUGAGUUGuaGUgGUGcCCG- -5'
9936 5' -52.6 NC_002641.1 + 125221 0.67 0.973467
Target:  5'- gCCaAGCCGCUUGGCcgCAgCGCuGGCc -3'
miRNA:   3'- aGG-UUGGUGAGUUGuaGUgGUGcCCG- -5'
9936 5' -52.6 NC_002641.1 + 66814 0.67 0.973193
Target:  5'- aCCAAUCcCcCuACAUCugcaguauggacgGCCGCGGGCa -3'
miRNA:   3'- aGGUUGGuGaGuUGUAG-------------UGGUGCCCG- -5'
9936 5' -52.6 NC_002641.1 + 128567 0.67 0.970638
Target:  5'- cUUAGCCACUCG-----GCCACGcGGCg -3'
miRNA:   3'- aGGUUGGUGAGUuguagUGGUGC-CCG- -5'
9936 5' -52.6 NC_002641.1 + 153906 0.67 0.970638
Target:  5'- cUUAGCCACUCG-----GCCACGcGGCg -3'
miRNA:   3'- aGGUUGGUGAGUuguagUGGUGC-CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.