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| GenBank Identifier | RefSeq Acc. | Name |
| 52139181 | NC_006273.1 | Human herpesvirus 5 (wild type strain Merlin) |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 30191 | - | 187967 | 89 | 23.5 | -19.5 | YP_081578 | 5' arm 3' arm | ||
| 2055 | - | 229380 | 89 | 19 | -19.5 | NP_040085 | 5' arm 3' arm | ||
| 29777 | + | 69444 | 88 | 19.5 | -19.6 | YP_081506 | 5' arm 3' arm | ||
| 29793 | + | 87508 | 90 | 19.5 | -19.6 | 5' arm 3' arm | |||
| 29909 | + | 151720 | 90 | 19 | -19.6 | YP_081550 | 5' arm 3' arm | ||
| 1552 | + | 27635 | 87 | 23 | -19.6 | hcmv-mir-UL22A | 5' arm 3' arm | ||
| 1619 | + | 87142 | 90 | 19.5 | -19.6 | 5' arm 3' arm | |||
| 1920 | - | 92602 | 81 | 19.5 | -19.6 | 5' arm 3' arm | |||
| 29754 | + | 42698 | 89 | 20.5 | -19.6 | YP_081491 | 5' arm 3' arm | ||
| 1681 | + | 124801 | 90 | 23 | -19.6 | NP_040020 | 5' arm 3' arm | ||
| 29728 | + | 27977 | 87 | 23 | -19.6 | #hcmv-mir-UL22A | 5' arm 3' arm | ||
| 30102 | - | 84573 | 87 | 20.5 | -19.7 | YP_081514 | 5' arm 3' arm | ||
| 1882 | - | 65672 | 90 | 22.5 | -19.7 | NP_039982 | 5' arm 3' arm | ||
| 1697 | + | 132740 | 90 | 19 | -19.7 | NP_040023 | 5' arm 3' arm | ||
| 29863 | + | 128903 | 89 | 19.5 | -19.7 | YP_081534 | 5' arm 3' arm | ||
| 1732 | + | 154656 | 90 | 22 | -19.7 | NP_040040 | 5' arm 3' arm | ||
| 1588 | + | 49320 | 90 | 19 | -19.7 | NP_039970 | 5' arm 3' arm | ||
| 29958 | + | 208936 | 90 | 20 | -19.7 | YP_081599 | 5' arm 3' arm | ||
| 29912 | + | 155032 | 90 | 22 | -19.7 | YP_081551 | 5' arm 3' arm | ||
| 30073 | - | 66031 | 90 | 22.5 | -19.7 | YP_081506 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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