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| GenBank Identifier | RefSeq Acc. | Name |
| 21716071 | NC_004065.1 | Murid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 15773 | + | 90701 | 88 | 19 | -19.8 | 5' arm 3' arm | |||
| 15731 | + | 62245 | 88 | 22 | -19.8 | YP_214058 | 5' arm 3' arm | ||
| 16108 | - | 120514 | 90 | 19.5 | -19.8 | YP_214086 | 5' arm 3' arm | ||
| 15830 | + | 131718 | 89 | 23 | -19.8 | 5' arm 3' arm | |||
| 15832 | + | 133643 | 88 | 20 | -19.8 | YP_214090 | 5' arm 3' arm | ||
| 15706 | + | 48109 | 89 | 20 | -19.81 | 5' arm 3' arm | |||
| 16234 | - | 229527 | 89 | 20 | -19.9 | YP_214170 | 5' arm 3' arm | ||
| 15947 | - | 21743 | 90 | 22.5 | -19.9 | YP_214028 | 5' arm 3' arm | ||
| 15861 | + | 152049 | 90 | 19 | -19.9 | YP_214105 | 5' arm 3' arm | ||
| 15806 | + | 117634 | 90 | 20 | -19.9 | YP_214085 | 5' arm 3' arm | ||
| 15975 | - | 37034 | 89 | 21 | -19.9 | YP_214044 | 5' arm 3' arm | ||
| 16185 | - | 186679 | 88 | 20 | -20 | YP_214129 | 5' arm 3' arm | ||
| 16089 | - | 108042 | 85 | 20.5 | -20 | YP_214078 | 5' arm 3' arm | ||
| 15757 | + | 78385 | 87 | 21.5 | -20 | YP_214065 | 5' arm 3' arm | ||
| 15682 | + | 28325 | 90 | 19 | -20 | YP_214034 | 5' arm 3' arm | ||
| 16159 | - | 153544 | 90 | 19 | -20 | YP_214105 | 5' arm 3' arm | ||
| 15870 | + | 165662 | 88 | 23 | -20.1 | YP_214109 | 5' arm 3' arm | ||
| 16001 | - | 53554 | 89 | 19 | -20.1 | YP_214052 | 5' arm 3' arm | ||
| 16004 | - | 54986 | 90 | 20 | -20.1 | 5' arm 3' arm | |||
| 15800 | + | 114041 | 89 | 19.5 | -20.1 | YP_214083 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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