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| GenBank Identifier | RefSeq Acc. | Name |
| 41057437 | NC_005337.1 | Bovine papular stomatitis virus |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 25643 | + | 79773 | 90 | 22 | -20.12 | NP_957984 | 5' arm 3' arm | ||
| 25536 | + | 19449 | 90 | 21.5 | -20.19 | NP_957928 | 5' arm 3' arm | ||
| 25642 | + | 79615 | 85 | 21 | -20.2 | NP_957984 | 5' arm 3' arm | ||
| 25960 | - | 126484 | 90 | 21.5 | -20.2 | NP_958034 | 5' arm 3' arm | ||
| 25626 | + | 71497 | 90 | 19.5 | -20.2 | NP_957977 | 5' arm 3' arm | ||
| 25900 | - | 90870 | 84 | 19 | -20.3 | NP_957995 | 5' arm 3' arm | ||
| 25855 | - | 63215 | 90 | 20 | -20.3 | NP_957970 | 5' arm 3' arm | ||
| 25513 | + | 7731 | 84 | 20.5 | -20.3 | NP_957918 | 5' arm 3' arm | ||
| 25858 | - | 65505 | 80 | 19.5 | -20.3 | NP_957973 | 5' arm 3' arm | ||
| 25743 | + | 133868 | 87 | 20 | -20.3 | NP_958041 | 5' arm 3' arm | ||
| 25744 | - | 564 | 87 | 20 | -20.3 | NP_958041 | 5' arm 3' arm | ||
| 25668 | + | 90027 | 89 | 24 | -20.3 | NP_957995 | 5' arm 3' arm | ||
| 25898 | - | 88868 | 85 | 20 | -20.4 | NP_957993 | 5' arm 3' arm | ||
| 25817 | - | 43907 | 88 | 20 | -20.4 | NP_957950 | 5' arm 3' arm | ||
| 25597 | + | 51966 | 88 | 21 | -20.5 | NP_957961 | 5' arm 3' arm | ||
| 25774 | - | 22787 | 88 | 20 | -20.5 | NP_957931 | 5' arm 3' arm | ||
| 25835 | - | 53374 | 90 | 20.5 | -20.5 | NP_957962 | 5' arm 3' arm | ||
| 25605 | + | 57845 | 83 | 22 | -20.5 | NP_957965 | 5' arm 3' arm | ||
| 25704 | + | 112995 | 90 | 20 | -20.5 | NP_958020 | 5' arm 3' arm | ||
| 25628 | + | 73948 | 88 | 22.5 | -20.5 | NP_957979 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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