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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF |
Known viral miRNA
|
Match to own genomic region# | Target prediction with RNAhybrid |
| 1577 | + | 41859 | 90 | 21 | -22.4 | NP_039966 | 5' arm 3' arm | ||
| 1574 | + | 41239 | 90 | 22 | -21.6 | NP_039966 | 5' arm 3' arm | ||
| 1581 | + | 44910 | 90 | 22.5 | -19.9 | NP_783782 | 5' arm 3' arm | ||
| 1562 | + | 36283 | 88 | 19 | -25 | NP_039963 | 5' arm 3' arm | ||
| 1555 | + | 32807 | 82 | 19 | -33.6 | NP_039961 | 5' arm 3' arm | ||
| 1554 | + | 32508 | 87 | 19 | -19.9 | NP_039960 | 5' arm 3' arm | ||
| 1541 | + | 7587 | 86 | 20.5 | -24.5 | 5' arm 3' arm | |||
| 1540 | + | 7227 | 89 | 19 | -21.9 | 5' arm 3' arm | |||
| 1543 | + | 15313 | 88 | 21.5 | -21.7 | NP_039940 | 5' arm 3' arm | ||
| 1546 | + | 21252 | 89 | 19.5 | -22.21 | NP_783773 | 5' arm 3' arm | ||
| 1547 | + | 21626 | 89 | 19 | -21.2 | NP_783773 | 5' arm 3' arm | ||
| 1551 | + | 26570 | 90 | 24 | -26.6 | NP_783775 | 5' arm 3' arm | ||
| 1549 | + | 25091 | 89 | 23 | -25.3 | 5' arm 3' arm | |||
| 1550 | + | 25937 | 78 | 21.5 | -25.9 | NP_039954 | 5' arm 3' arm | ||
| 1548 | + | 23960 | 85 | 20 | -20.1 | NP_039952 | 5' arm 3' arm | ||
| 29988 | - | 2252 | 90 | 20 | -24.2 | YP_081455 | 5' arm 3' arm | ||
| 1556 | + | 33225 | 90 | 21 | -26.4 | NP_039961 | 5' arm 3' arm | ||
| 1559 | + | 34283 | 85 | 20.5 | -26 | NP_039961 | 5' arm 3' arm | ||
| 1560 | + | 34569 | 88 | 20.5 | -26.3 | NP_039961 | 5' arm 3' arm | ||
| 1558 | + | 34069 | 88 | 20 | -28.5 | NP_039961 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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