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| GenBank Identifier | RefSeq Acc. | Name |
| 28373214 | NC_001347.2 | Human herpesvirus 5 (laboratory strain AD169) |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 2003 | - | 189670 | 90 | 26.5 | -23.8 | 5' arm 3' arm | |||
| 29762 | + | 49840 | 85 | 26.5 | -28.7 | 5' arm | |||
| 1589 | + | 49490 | 85 | 26.5 | -28.7 | ||||
| 2026 | - | 208598 | 85 | 26.5 | -32.9 | NP_040104 | 5' arm 3' arm | ||
| 1621 | + | 87421 | 86 | 26.5 | -33.7 | 5' arm 3' arm | |||
| 29796 | + | 87787 | 86 | 26.5 | -36.2 | 5' arm 3' arm | |||
| 1962 | - | 148739 | 86 | 26.5 | -24.9 | NP_783791 | 5' arm 3' arm | ||
| 29719 | + | 790 | 88 | 26.5 | -28.2 | 5' arm 3' arm | |||
| 1537 | + | 728 | 90 | 26.5 | -23.8 | 5' arm 3' arm | |||
| 30228 | - | 213882 | 85 | 26.5 | -32.9 | YP_081604 | 5' arm 3' arm | ||
| 30202 | - | 194878 | 88 | 26.5 | -28.2 | 5' arm 3' arm | |||
| 1774 | + | 196978 | 90 | 26 | -27.5 | hcmv-mir-US5-1 | |||
| 30123 | - | 107217 | 89 | 26 | -22.1 | YP_081521 | 5' arm 3' arm | ||
| 30140 | - | 135779 | 90 | 26 | -20.1 | YP_081539 | 5' arm 3' arm | ||
| 29954 | + | 202262 | 90 | 26 | -27.5 | #hcmv-mir-US5-1 | 3' arm | ||
| 1949 | - | 135403 | 90 | 26 | -20.1 | NP_040027 | 5' arm 3' arm | ||
| 1638 | + | 99212 | 85 | 26 | -34 | NP_040003 | 5' arm 3' arm | ||
| 1921 | - | 92789 | 90 | 25.5 | -24.2 | 5' arm 3' arm | |||
| 1566 | + | 37950 | 85 | 25 | -24.2 | NP_783780 | 5' arm 3' arm | ||
| 2001 | - | 185866 | 90 | 25 | -28.7 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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