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| GenBank Identifier | RefSeq Acc. | Name |
| 56694721 | NC_006560.1 | Cercopithecine herpesvirus 2 |
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| ID | strand | start position | length |
sRNA loop score
|
core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31143 | - | 13191 | 85 | 23 | -31.1 | YP_164447 | 5' arm 3' arm | ||
| 31048 | + | 59404 | 89 | 23 | -30.8 | YP_164472 | 5' arm 3' arm | ||
| 31052 | + | 62498 | 90 | 23 | -25.6 | YP_164473 | 5' arm 3' arm | ||
| 31239 | - | 104980 | 90 | 23 | -35 | YP_164494 | 5' arm 3' arm | ||
| 31264 | - | 137210 | 87 | 23 | -23.6 | YP_164508 | 5' arm 3' arm | ||
| 31106 | + | 120936 | 90 | 23 | -29.1 | YP_164442 | 5' arm 3' arm | ||
| 31130 | - | 2594 | 90 | 23 | -29.1 | YP_164501 | 5' arm 3' arm | ||
| 31018 | + | 39497 | 90 | 23 | -24 | YP_164461 | 5' arm 3' arm | ||
| 31167 | - | 40496 | 85 | 23 | -35.1 | YP_164462 | 5' arm 3' arm | ||
| 31097 | + | 108369 | 88 | 23 | -23.1 | YP_164496 | 5' arm 3' arm | ||
| 31122 | + | 142819 | 90 | 23 | -29.2 | YP_164513 | 5' arm 3' arm | ||
| 31132 | - | 3107 | 89 | 23 | -27 | 5' arm 3' arm | |||
| 30994 | + | 1901 | 88 | 22.5 | -28.8 | 5' arm 3' arm | |||
| 31002 | + | 13626 | 89 | 22.5 | -26.4 | YP_164447 | 5' arm 3' arm | ||
| 31099 | + | 109836 | 90 | 22.5 | -25.51 | YP_164497 | 5' arm 3' arm | ||
| 31216 | - | 86736 | 90 | 22.5 | -27.2 | YP_164482 | 5' arm 3' arm | ||
| 31234 | - | 101660 | 84 | 22.5 | -27.3 | YP_164491 | 5' arm 3' arm | ||
| 31260 | - | 132656 | 88 | 22.5 | -29 | 5' arm 3' arm | |||
| 31074 | + | 85893 | 90 | 22.5 | -26.2 | YP_164482 | 5' arm 3' arm | ||
| 31038 | + | 53647 | 86 | 22.5 | -22.1 | YP_164470 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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