miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
9629267 NC_001798.1 Human herpesvirus 2

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
5522 - 150223 90 24 -23 NP_044530 5' arm      3' arm
5494 - 135955 89 23 -24.7 NP_044532 5' arm      3' arm
5488 - 132741 82 26 -28.8 5' arm      3' arm
5507 - 144193 89 19 -30.2 NP_044538 5' arm      3' arm
5516 - 148557 88 19 -21.5 5' arm      3' arm
5486 - 126938 90 25.5 -28.3 5' arm      3' arm
5490 - 133807 90 21.5 -21.3 NP_044531 5' arm      3' arm
5520 - 149421 89 20 -27.2 5' arm      3' arm
5495 - 136447 87 21 -25.7 NP_044533 5' arm      3' arm
5500 - 140412 90 21 -27.1 NP_044535 5' arm      3' arm
5510 - 145847 90 21 -21.9 5' arm      3' arm
5514 - 147059 90 21 -20.8 NP_044541 5' arm      3' arm
5481 - 118879 88 29 -26.4 5' arm      3' arm
5484 - 123680 89 23.5 -31.3 5' arm      3' arm
5489 - 132879 82 26 -26.9 5' arm      3' arm
5509 - 144898 89 20.5 -32.1 NP_044538 5' arm      3' arm
5504 - 141799 90 21.5 -24.5 NP_044536 5' arm      3' arm
5515 - 147878 86 21 -20.49 NP_044543 5' arm      3' arm
5499 - 139134 90 21.5 -27.4 NP_044534 5' arm      3' arm
5498 - 139036 90 20 -20.6 NP_044534 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.