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GenBank Identifier | RefSeq Acc. | Name |
56694721 | NC_006560.1 | Cercopithecine herpesvirus 2 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
30991 | + | 774 | 88 | 24.5 | -30 | 5' arm 3' arm | |||
30992 | + | 1416 | 90 | 22 | -23.8 | 5' arm 3' arm | |||
30993 | + | 1682 | 90 | 20.5 | -29.4 | 5' arm 3' arm | |||
30994 | + | 1901 | 88 | 22.5 | -28.8 | 5' arm 3' arm | |||
30995 | + | 8813 | 90 | 24 | -32.5 | 5' arm 3' arm | |||
30996 | + | 9575 | 89 | 21 | -20.51 | YP_164443 | 5' arm 3' arm | ||
30997 | + | 10623 | 88 | 19 | -26 | YP_164444 | 5' arm 3' arm | ||
30998 | + | 10727 | 88 | 19 | -19.5 | YP_164444 | 5' arm 3' arm | ||
30999 | + | 11815 | 87 | 22 | -26.8 | 5' arm 3' arm | |||
31000 | + | 12484 | 90 | 25.5 | -34.8 | 5' arm 3' arm | |||
31001 | + | 12741 | 88 | 21.5 | -23.8 | YP_164447 | 5' arm 3' arm | ||
31002 | + | 13626 | 89 | 22.5 | -26.4 | YP_164447 | 5' arm 3' arm | ||
31003 | + | 20506 | 86 | 22 | -20.9 | YP_164451 | 5' arm 3' arm | ||
31004 | + | 22533 | 87 | 20 | -20.4 | YP_164451 | 5' arm 3' arm | ||
31005 | + | 23548 | 90 | 20 | -19.5 | YP_164452 | 5' arm 3' arm | ||
31006 | + | 27678 | 88 | 22 | -25.1 | YP_164455 | 5' arm 3' arm | ||
31007 | + | 27792 | 87 | 19 | -22.4 | YP_164455 | 5' arm 3' arm | ||
31008 | + | 28932 | 87 | 22 | -25.4 | YP_164457 | 5' arm 3' arm | ||
31009 | + | 29020 | 87 | 20.5 | -24.2 | YP_164457 | 5' arm 3' arm | ||
31010 | + | 29649 | 89 | 19.5 | -21.4 | YP_164457 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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