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| GenBank Identifier | RefSeq Acc. | Name |
| 57790931 | NC_006623.1 | Gallid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31330 | + | 115698 | 90 | 20 | -20.4 | YP_182411 | 5' arm 3' arm | ||
| 31346 | + | 146100 | 89 | 19.5 | -30.4 | YP_182411 | 5' arm 3' arm | ||
| 31345 | + | 145648 | 89 | 20 | -29 | YP_182411 | 5' arm 3' arm | ||
| 31397 | - | 146393 | 87 | 22 | -28.6 | YP_182411 | 5' arm 3' arm | ||
| 31329 | + | 115332 | 87 | 22 | -28.6 | YP_182411 | 5' arm 3' arm | ||
| 31348 | + | 146307 | 87 | 23.5 | -30.12 | YP_182411 | 5' arm 3' arm | ||
| 31344 | + | 144761 | 80 | 22 | -20.4 | YP_182411 | 5' arm 3' arm | ||
| 31396 | - | 146027 | 90 | 20 | -20.4 | YP_182411 | 5' arm 3' arm | ||
| 31390 | - | 139378 | 89 | 21.5 | -22.1 | YP_182410 | 5' arm 3' arm | ||
| 31336 | + | 122347 | 89 | 21.5 | -22.1 | YP_182410 | 5' arm 3' arm | ||
| 31335 | + | 122131 | 89 | 19 | -21.4 | YP_182410 | 5' arm 3' arm | ||
| 31341 | + | 137838 | 85 | 19 | -26.3 | YP_182409 | 5' arm 3' arm | ||
| 31389 | - | 137341 | 88 | 25.5 | -24 | YP_182408 | 5' arm 3' arm | ||
| 31388 | - | 137069 | 88 | 23 | -24 | YP_182408 | 5' arm 3' arm | ||
| 31387 | - | 136141 | 87 | 20.5 | -23 | YP_182407 | 5' arm 3' arm | ||
| 31386 | - | 134056 | 90 | 20 | -23.8 | YP_182406 | 5' arm 3' arm | ||
| 31340 | + | 133967 | 90 | 20 | -19.8 | YP_182406 | 5' arm 3' arm | ||
| 31385 | - | 133599 | 83 | 22.5 | -22.3 | YP_182405 | 5' arm 3' arm | ||
| 31339 | + | 129798 | 85 | 21.5 | -20.5 | YP_182404 | 5' arm 3' arm | ||
| 31383 | - | 131314 | 88 | 23 | -22.4 | YP_182404 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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