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| GenBank Identifier | RefSeq Acc. | Name |
| 57790931 | NC_006623.1 | Gallid herpesvirus 1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 31383 | - | 131314 | 88 | 23 | -22.4 | YP_182404 | 5' arm 3' arm | ||
| 31381 | - | 130081 | 90 | 19.5 | -29.6 | YP_182404 | 5' arm 3' arm | ||
| 31384 | - | 131702 | 90 | 22.5 | -23.2 | YP_182404 | 5' arm 3' arm | ||
| 31338 | + | 128908 | 82 | 23 | -21.4 | YP_182403 | 5' arm 3' arm | ||
| 31380 | - | 129160 | 89 | 19 | -21 | YP_182403 | 5' arm 3' arm | ||
| 31337 | + | 126887 | 90 | 19 | -28.9 | YP_182402 | 5' arm 3' arm | ||
| 31379 | - | 126361 | 88 | 19 | -29.5 | YP_182401 | 5' arm 3' arm | ||
| 31378 | - | 123887 | 85 | 19 | -26.3 | YP_182399 | 5' arm 3' arm | ||
| 31391 | - | 139594 | 89 | 19 | -21.4 | YP_182398 | 5' arm 3' arm | ||
| 31349 | + | 146486 | 88 | 19.5 | -20.3 | YP_182397 | 5' arm 3' arm | ||
| 31395 | - | 145264 | 90 | 25.5 | -23.3 | YP_182397 | 5' arm 3' arm | ||
| 31347 | + | 146210 | 90 | 19.5 | -28.6 | YP_182397 | 5' arm 3' arm | ||
| 31331 | + | 116461 | 90 | 25.5 | -23.3 | YP_182397 | 5' arm 3' arm | ||
| 31371 | - | 115418 | 87 | 23.5 | -30.12 | YP_182397 | 5' arm 3' arm | ||
| 31375 | - | 116964 | 80 | 22 | -20.4 | YP_182397 | 5' arm 3' arm | ||
| 31370 | - | 115239 | 88 | 19.5 | -20.3 | YP_182397 | 5' arm 3' arm | ||
| 31372 | - | 115515 | 90 | 19.5 | -28.6 | YP_182397 | 5' arm 3' arm | ||
| 31373 | - | 115625 | 89 | 19.5 | -30.4 | YP_182397 | 5' arm 3' arm | ||
| 31374 | - | 116077 | 89 | 20 | -29 | YP_182397 | 5' arm 3' arm | ||
| 31324 | + | 111359 | 88 | 20.5 | -26.5 | YP_182396 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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