miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
40807285 NC_001978.2 Bacteriophage phi-C31

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
8106 + 19700 90 20 -20.5 NP_047944 5' arm      3' arm
8184 - 20525 89 19 -20.6 NP_047944 5' arm      3' arm
8123 + 25798 89 19.5 -20.6 NP_047955 5' arm      3' arm
8118 + 24604 88 23 -20.6 NP_047952 5' arm      3' arm
8169 - 11030 87 21.5 -20.7 NP_047934 5' arm      3' arm
8175 - 16324 90 21.5 -20.7 NP_047940 5' arm      3' arm
8203 - 30426 84 22.5 -20.7 NP_047957 5' arm      3' arm
8108 + 21204 88 19 -20.8 NP_047944 5' arm      3' arm
8145 + 36426 89 20 -20.9 NP_047970 5' arm      3' arm
8205 - 31707 89 20 -20.9 NP_047959 5' arm      3' arm
8116 + 24161 90 19.5 -21 NP_047950 5' arm      3' arm
8128 + 26853 87 20 -21.3 NP_047955 5' arm      3' arm
8090 + 10213 81 23 -21.3 NP_047934 5' arm      3' arm
8131 + 28041 88 19.5 -21.3 NP_047956 5' arm      3' arm
8197 - 26442 89 19.5 -21.4 NP_047955 5' arm      3' arm
8104 + 19157 89 20.5 -21.4 5' arm      3' arm
8092 + 12247 90 21 -21.4 NP_047936 5' arm      3' arm
8185 - 20672 84 19.5 -21.42 NP_047944 5' arm      3' arm
8208 - 33114 88 19.5 -21.6 NP_047961 5' arm      3' arm
8103 + 18600 89 20.5 -21.6 NP_047943 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.