miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18640469 NC_003390.1 Cyanophage P60

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
13027 + 18523 90 20 -19.4 NP_570336 5' arm      3' arm
13008 + 844 88 20 -19.4 5' arm      3' arm
13056 - 7037 90 22 -19.7 NP_570319 5' arm      3' arm
13016 + 6987 90 21 -19.9 NP_570319 5' arm      3' arm
13045 + 38801 86 20.5 -19.9 NP_570369 5' arm      3' arm
13034 + 28086 90 19.5 -20 NP_570351 5' arm      3' arm
13025 + 15085 89 19.5 -20.1 NP_570330 5' arm      3' arm
13011 + 3715 89 21 -20.2 NP_570316 5' arm      3' arm
13015 + 6702 89 20 -20.5 NP_570319 5' arm      3' arm
13023 + 11125 86 19 -20.5 NP_570324 5' arm      3' arm
13046 + 39465 86 21 -20.6 NP_570370 5' arm      3' arm
13049 + 46631 89 19 -20.7 5' arm      3' arm
13061 - 10749 86 20 -20.8 5' arm      3' arm
13052 - 2499 88 20 -21 5' arm      3' arm
13035 + 28363 87 23 -21.06 NP_570351 5' arm      3' arm
13064 - 14132 89 20 -21.1 NP_570330 5' arm      3' arm
13032 + 25882 81 20 -21.3 NP_570347 5' arm      3' arm
13071 - 28517 89 23 -21.3 NP_570351 5' arm      3' arm
13081 - 44089 87 22 -21.4 NP_570384 5' arm      3' arm
13065 - 20259 90 21 -21.5 NP_570339 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.