miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18071213 NC_003324.1 Sinorhizobium meliloti phage PBC5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12321 + 1457 90 20.5 -23 NP_542261 5' arm      3' arm
12322 + 3509 89 23 -32 NP_542265 5' arm      3' arm
12323 + 3928 88 23.5 -27.2 NP_542266 5' arm      3' arm
12324 + 4844 89 20.5 -24.3 NP_542267 5' arm      3' arm
12325 + 6278 90 22.5 -23.24 NP_542268 5' arm      3' arm
12326 + 7658 86 19.5 -25.7 NP_542270 5' arm      3' arm
12327 + 8099 88 20 -25.31 NP_542271 5' arm      3' arm
12328 + 9613 89 20 -28.9 NP_542273 5' arm      3' arm
12329 + 10636 88 20.5 -22.8 NP_542276 5' arm      3' arm
12330 + 11543 90 19 -31.1 NP_542277 5' arm      3' arm
12331 + 12484 88 23.5 -21.6 NP_542277 5' arm      3' arm
12332 + 14453 89 19.5 -27 NP_542279 5' arm      3' arm
12333 + 15998 89 20.5 -29.2 NP_542281 5' arm      3' arm
12334 + 16533 89 21.5 -33.5 NP_542282 5' arm      3' arm
12335 + 16900 87 21 -24.5 5' arm      3' arm
12336 + 17201 90 21.5 -25.1 NP_542283 5' arm      3' arm
12337 + 17823 87 22 -22.52 NP_542283 5' arm      3' arm
12338 + 18309 89 21 -31.3 NP_542283 5' arm      3' arm
12339 + 18508 88 21.5 -20.7 NP_542284 5' arm      3' arm
12340 + 18751 90 20 -25.2 NP_542283 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.