miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18071213 NC_003324.1 Sinorhizobium meliloti phage PBC5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12341 + 19246 87 20 -20.5 NP_542283 5' arm      3' arm
12342 + 19424 90 22 -24.3 NP_542285 5' arm      3' arm
12343 + 19634 90 20 -20 NP_542285 5' arm      3' arm
12344 + 20471 89 20 -31.6 NP_542287 5' arm      3' arm
12345 + 21527 90 21.5 -25.9 NP_542283 5' arm      3' arm
12346 + 21957 90 20.5 -20.2 NP_542290 5' arm      3' arm
12347 + 22612 90 20 -19.6 NP_542283 5' arm      3' arm
12348 + 23204 90 22.5 -19.5 NP_542290 5' arm      3' arm
12349 + 23603 87 19.5 -25 NP_542283 5' arm      3' arm
12350 + 23822 90 21 -21.2 NP_542291 5' arm      3' arm
12351 + 24022 89 24 -21.4 NP_542291 5' arm      3' arm
12352 + 24484 89 22 -23.6 NP_542291 5' arm      3' arm
12353 + 24821 90 22.5 -19.4 NP_542283 5' arm      3' arm
12354 + 25005 89 22 -27.6 NP_542283 5' arm      3' arm
12355 + 25329 83 19.5 -20.6 NP_542283 5' arm      3' arm
12356 + 26466 90 21 -24.71 NP_542293 5' arm      3' arm
12357 + 26819 88 22 -24.7 NP_542294 5' arm      3' arm
12358 + 27044 87 22 -22.7 NP_542293 5' arm      3' arm
12359 + 27150 87 19 -22.24 NP_542294 5' arm      3' arm
12360 + 27857 90 20 -26.2 NP_542294 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.