miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18071213 NC_003324.1 Sinorhizobium meliloti phage PBC5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12420 - 6172 87 19.5 -24.1 5' arm      3' arm
12460 - 34225 90 23 -23.7 5' arm      3' arm
12467 - 41603 87 19.5 -25.1 5' arm      3' arm
12335 + 16900 87 21 -24.5 5' arm      3' arm
12370 + 32746 90 22.5 -33.8 5' arm      3' arm
12459 - 33922 86 22 -25.3 5' arm      3' arm
12457 - 32755 88 19.5 -24.6 5' arm      3' arm
12498 - 57243 90 24 -23 5' arm      3' arm
12373 + 33835 89 24 -26.7 5' arm      3' arm
12499 - 57384 90 22 -26.3 5' arm      3' arm
12432 - 13441 89 20.5 -19.5 5' arm      3' arm
12477 - 47215 90 19.5 -24.2 5' arm      3' arm
12408 - 2340 90 21 -26.5 5' arm      3' arm
12419 - 5808 90 22.5 -26.5 5' arm      3' arm
12418 - 5382 87 21.5 -22.4 5' arm      3' arm
12406 - 119 89 20 -22.2 5' arm      3' arm
12321 + 1457 90 20.5 -23 NP_542261 5' arm      3' arm
12407 - 1384 87 19.5 -23 NP_542261 5' arm      3' arm
12409 - 2498 87 21.5 -26.1 NP_542262 5' arm      3' arm
12410 - 3164 87 20.5 -22.5 NP_542263 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.