miRNA display CGI

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ID	strand	start position	length	sRNA loop score	core MFE.	NP ORF	Known viral miRNA	Match to own genomic region#	Target prediction with RNAhybrid
12370	+	32746	90	22.5	-33.8			5' arm      3' arm
12334	+	16533	89	21.5	-33.5	NP_542282		5' arm      3' arm
12322	+	3509	89	23	-32	NP_542265		5' arm      3' arm
12427	-	11234	88	20.5	-31.8	NP_542276		5' arm      3' arm
12344	+	20471	89	20	-31.6	NP_542287		5' arm      3' arm
12497	-	56652	87	19.5	-31.6	NP_542343		5' arm      3' arm
12338	+	18309	89	21	-31.3	NP_542283		5' arm      3' arm
12330	+	11543	90	19	-31.1	NP_542277		5' arm      3' arm
12400	+	50433	90	22	-30.01	NP_542328		5' arm      3' arm
12426	-	10690	88	20.5	-29.9	NP_542276		5' arm      3' arm
12361	+	28270	86	22	-29.6	NP_542294		5' arm      3' arm
12417	-	5127	90	22	-29.2	NP_542266		5' arm      3' arm
12333	+	15998	89	20.5	-29.2	NP_542281		5' arm      3' arm
12449	-	29181	90	23.5	-29.1	NP_542293		5' arm      3' arm
12403	+	55186	87	19	-28.9	NP_542339		5' arm      3' arm
12328	+	9613	89	20	-28.9	NP_542273		5' arm      3' arm
12454	-	31869	89	20.5	-28.61	NP_542293		5' arm      3' arm
12475	-	45060	86	20.5	-28.2	NP_542317		5' arm      3' arm
12394	+	46011	89	21.5	-28.2	NP_542319		5' arm      3' arm
12491	-	54540	87	22	-28.2	NP_542336		5' arm      3' arm

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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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