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GenBank Identifier | RefSeq Acc. | Name |
18071213 | NC_003324.1 | Sinorhizobium meliloti phage PBC5 |
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ID | strand | start position | length | sRNA loop score |
core MFE.![]() |
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
12370 | + | 32746 | 90 | 22.5 | -33.8 | 5' arm 3' arm | |||
12334 | + | 16533 | 89 | 21.5 | -33.5 | NP_542282 | 5' arm 3' arm | ||
12322 | + | 3509 | 89 | 23 | -32 | NP_542265 | 5' arm 3' arm | ||
12427 | - | 11234 | 88 | 20.5 | -31.8 | NP_542276 | 5' arm 3' arm | ||
12344 | + | 20471 | 89 | 20 | -31.6 | NP_542287 | 5' arm 3' arm | ||
12497 | - | 56652 | 87 | 19.5 | -31.6 | NP_542343 | 5' arm 3' arm | ||
12338 | + | 18309 | 89 | 21 | -31.3 | NP_542283 | 5' arm 3' arm | ||
12330 | + | 11543 | 90 | 19 | -31.1 | NP_542277 | 5' arm 3' arm | ||
12400 | + | 50433 | 90 | 22 | -30.01 | NP_542328 | 5' arm 3' arm | ||
12426 | - | 10690 | 88 | 20.5 | -29.9 | NP_542276 | 5' arm 3' arm | ||
12361 | + | 28270 | 86 | 22 | -29.6 | NP_542294 | 5' arm 3' arm | ||
12417 | - | 5127 | 90 | 22 | -29.2 | NP_542266 | 5' arm 3' arm | ||
12333 | + | 15998 | 89 | 20.5 | -29.2 | NP_542281 | 5' arm 3' arm | ||
12449 | - | 29181 | 90 | 23.5 | -29.1 | NP_542293 | 5' arm 3' arm | ||
12403 | + | 55186 | 87 | 19 | -28.9 | NP_542339 | 5' arm 3' arm | ||
12328 | + | 9613 | 89 | 20 | -28.9 | NP_542273 | 5' arm 3' arm | ||
12454 | - | 31869 | 89 | 20.5 | -28.61 | NP_542293 | 5' arm 3' arm | ||
12475 | - | 45060 | 86 | 20.5 | -28.2 | NP_542317 | 5' arm 3' arm | ||
12394 | + | 46011 | 89 | 21.5 | -28.2 | NP_542319 | 5' arm 3' arm | ||
12491 | - | 54540 | 87 | 22 | -28.2 | NP_542336 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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