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| GenBank Identifier | RefSeq Acc. | Name |
| 18071213 | NC_003324.1 | Sinorhizobium meliloti phage PBC5 |
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| ID | strand | start position | length | sRNA loop score |
core MFE.
|
NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 12353 | + | 24821 | 90 | 22.5 | -19.4 | NP_542283 | 5' arm 3' arm | ||
| 12348 | + | 23204 | 90 | 22.5 | -19.5 | NP_542290 | 5' arm 3' arm | ||
| 12432 | - | 13441 | 89 | 20.5 | -19.5 | 5' arm 3' arm | |||
| 12396 | + | 48819 | 89 | 19.5 | -19.6 | NP_542325 | 5' arm 3' arm | ||
| 12466 | - | 41400 | 90 | 21.5 | -19.6 | NP_542310 | 5' arm 3' arm | ||
| 12347 | + | 22612 | 90 | 20 | -19.6 | NP_542283 | 5' arm 3' arm | ||
| 12431 | - | 13184 | 89 | 22 | -19.6 | NP_542277 | 5' arm 3' arm | ||
| 12430 | - | 12109 | 90 | 22 | -19.6 | NP_542277 | 5' arm 3' arm | ||
| 12378 | + | 35761 | 89 | 20.5 | -19.7 | NP_542303 | 5' arm 3' arm | ||
| 12429 | - | 11743 | 90 | 22.5 | -19.7 | NP_542277 | 5' arm 3' arm | ||
| 12372 | + | 33556 | 87 | 21 | -19.9 | NP_542298 | 5' arm 3' arm | ||
| 12494 | - | 55544 | 90 | 19.5 | -19.9 | NP_542337 | 5' arm 3' arm | ||
| 12343 | + | 19634 | 90 | 20 | -20 | NP_542285 | 5' arm 3' arm | ||
| 12424 | - | 8742 | 86 | 22.5 | -20.1 | NP_542272 | 5' arm 3' arm | ||
| 12452 | - | 31667 | 90 | 19.5 | -20.1 | NP_542293 | 5' arm 3' arm | ||
| 12346 | + | 21957 | 90 | 20.5 | -20.2 | NP_542290 | 5' arm 3' arm | ||
| 12404 | + | 56626 | 90 | 19.5 | -20.2 | NP_542343 | 5' arm 3' arm | ||
| 12362 | + | 28381 | 89 | 20.5 | -20.3 | NP_542293 | 5' arm 3' arm | ||
| 12486 | - | 51025 | 89 | 23.5 | -20.3 | NP_542330 | 5' arm 3' arm | ||
| 12468 | - | 41881 | 89 | 19.5 | -20.4 | NP_542311 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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