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| GenBank Identifier | RefSeq Acc. | Name |
| 18071213 | NC_003324.1 | Sinorhizobium meliloti phage PBC5 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 12427 | - | 11234 | 88 | 20.5 | -31.8 | NP_542276 | 5' arm 3' arm | ||
| 12329 | + | 10636 | 88 | 20.5 | -22.8 | NP_542276 | 5' arm 3' arm | ||
| 12426 | - | 10690 | 88 | 20.5 | -29.9 | NP_542276 | 5' arm 3' arm | ||
| 12330 | + | 11543 | 90 | 19 | -31.1 | NP_542277 | 5' arm 3' arm | ||
| 12331 | + | 12484 | 88 | 23.5 | -21.6 | NP_542277 | 5' arm 3' arm | ||
| 12429 | - | 11743 | 90 | 22.5 | -19.7 | NP_542277 | 5' arm 3' arm | ||
| 12430 | - | 12109 | 90 | 22 | -19.6 | NP_542277 | 5' arm 3' arm | ||
| 12431 | - | 13184 | 89 | 22 | -19.6 | NP_542277 | 5' arm 3' arm | ||
| 12434 | - | 14681 | 90 | 21.5 | -23.5 | NP_542279 | 5' arm 3' arm | ||
| 12433 | - | 14409 | 90 | 23.5 | -21.4 | NP_542279 | 5' arm 3' arm | ||
| 12332 | + | 14453 | 89 | 19.5 | -27 | NP_542279 | 5' arm 3' arm | ||
| 12333 | + | 15998 | 89 | 20.5 | -29.2 | NP_542281 | 5' arm 3' arm | ||
| 12334 | + | 16533 | 89 | 21.5 | -33.5 | NP_542282 | 5' arm 3' arm | ||
| 12347 | + | 22612 | 90 | 20 | -19.6 | NP_542283 | 5' arm 3' arm | ||
| 12353 | + | 24821 | 90 | 22.5 | -19.4 | NP_542283 | 5' arm 3' arm | ||
| 12340 | + | 18751 | 90 | 20 | -25.2 | NP_542283 | 5' arm 3' arm | ||
| 12341 | + | 19246 | 87 | 20 | -20.5 | NP_542283 | 5' arm 3' arm | ||
| 12436 | - | 17662 | 90 | 21 | -20.9 | NP_542283 | 5' arm 3' arm | ||
| 12438 | - | 18840 | 90 | 20.5 | -24.6 | NP_542283 | 5' arm 3' arm | ||
| 12336 | + | 17201 | 90 | 21.5 | -25.1 | NP_542283 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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