miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
18071213 NC_003324.1 Sinorhizobium meliloti phage PBC5

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
12480 - 48846 87 26.5 -22.5 NP_542324 5' arm      3' arm
12374 + 34456 90 23.5 -22.5 NP_542300 5' arm      3' arm
12410 - 3164 87 20.5 -22.5 NP_542263 5' arm      3' arm
12388 + 44438 90 21 -22.5 NP_542316 5' arm      3' arm
12337 + 17823 87 22 -22.52 NP_542283 5' arm      3' arm
12493 - 55434 88 19 -22.6 NP_542339 5' arm      3' arm
12405 + 56770 89 22.5 -22.6 NP_542343 5' arm      3' arm
12439 - 19092 89 19 -22.7 NP_542283 5' arm      3' arm
12358 + 27044 87 22 -22.7 NP_542293 5' arm      3' arm
12385 + 40561 90 21.5 -22.7 NP_542309 5' arm      3' arm
12375 + 34755 89 21.5 -22.7 NP_542301 5' arm      3' arm
12461 - 34518 90 21 -22.7 NP_542299 5' arm      3' arm
12329 + 10636 88 20.5 -22.8 NP_542276 5' arm      3' arm
12443 - 22044 88 21.5 -22.9 NP_542283 5' arm      3' arm
12498 - 57243 90 24 -23 5' arm      3' arm
12407 - 1384 87 19.5 -23 NP_542261 5' arm      3' arm
12321 + 1457 90 20.5 -23 NP_542261 5' arm      3' arm
12386 + 42754 90 21 -23.1 NP_542312 5' arm      3' arm
12476 - 45518 86 22 -23.1 NP_542317 5' arm      3' arm
12471 - 42629 87 20 -23.16 NP_542312 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.