miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
29566737 NC_004688.1 Mycobacteriophage Omega virion

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
20758 - 109679 86 21 -32.7 NP_818534 5' arm      3' arm
20757 - 109020 89 24 -25.5 NP_818532 5' arm      3' arm
20572 + 108612 90 20.5 -21 NP_818531 5' arm      3' arm
20756 - 108744 89 20 -21 NP_818531 5' arm      3' arm
20755 - 107867 89 24.5 -23.9 NP_818528 5' arm      3' arm
20754 - 107113 90 20 -24.5 NP_818525       3' arm
20753 - 106739 88 20 -26.7 NP_818523 5' arm      3' arm
20752 - 105349 89 21.5 -20 NP_818517 5' arm      3' arm
20570 + 104655 90 24 -21.9 NP_818515 5' arm      3' arm
20751 - 104515 90 19 -20.7 NP_818514 5' arm      3' arm
20750 - 104224 90 21 -20.7 NP_818513 5' arm      3' arm
20569 + 102740 90 20 -20.4 NP_818510 5' arm      3' arm
20568 + 102389 90 24.5 -19.7 NP_818509 5' arm      3' arm
20748 - 102414 87 20.5 -22.4 NP_818509 5' arm      3' arm
20567 + 102251 78 21 -23.9 NP_818509 5' arm      3' arm
20747 - 102081 86 19 -20.1 NP_818508 5' arm      3' arm
20746 - 101626 89 21.5 -24.5 NP_818506 5' arm      3' arm
20565 + 101277 90 20 -27.2 NP_818506 5' arm      3' arm
20564 + 101045 90 21 -23.3 NP_818506 5' arm      3' arm
20566 + 101540 84 19.5 -21.1 NP_818506 5' arm      3' arm
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.