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GenBank Identifier | RefSeq Acc. | Name |
57977268 | NC_004778.3 | Choristoneura fumiferana MNPV |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
21181 | + | 977 | 90 | 21.5 | -24.9 | NP_848314 | 5' arm 3' arm | ||
21182 | + | 1629 | 89 | 21.5 | -29.4 | NP_848315 | 5' arm 3' arm | ||
21183 | + | 1893 | 89 | 22.5 | -27.8 | NP_848316 | 5' arm 3' arm | ||
21184 | + | 2272 | 90 | 22 | -21.4 | NP_848317 | 5' arm 3' arm | ||
21185 | + | 4029 | 87 | 22 | -31.2 | NP_848320 | 5' arm 3' arm | ||
21186 | + | 6762 | 88 | 23 | -28.2 | NP_848324 | 5' arm 3' arm | ||
21187 | + | 7549 | 90 | 21 | -21.5 | NP_848325 | 5' arm 3' arm | ||
21188 | + | 8994 | 90 | 22 | -24.3 | NP_848326 | 5' arm 3' arm | ||
21189 | + | 9441 | 90 | 21.5 | -25.4 | NP_848326 | 5' arm 3' arm | ||
21190 | + | 10240 | 87 | 19 | -21.4 | NP_848327 | 5' arm 3' arm | ||
21191 | + | 12308 | 89 | 20 | -22.8 | NP_848330 | 5' arm 3' arm | ||
21192 | + | 13961 | 88 | 22.5 | -20.7 | NP_848332 | 5' arm 3' arm | ||
21193 | + | 14740 | 90 | 19 | -22.5 | NP_848332 | 5' arm 3' arm | ||
21194 | + | 16327 | 89 | 22.5 | -26.4 | NP_848333 | 5' arm 3' arm | ||
21195 | + | 19689 | 90 | 24 | -23.4 | 5' arm 3' arm | |||
21196 | + | 21153 | 90 | 24.5 | -25.5 | NP_848340 | 5' arm 3' arm | ||
21197 | + | 22376 | 90 | 21.5 | -25.3 | NP_848341 | 5' arm 3' arm | ||
21198 | + | 22892 | 90 | 20 | -23.3 | NP_848341 | 5' arm 3' arm | ||
21199 | + | 23879 | 90 | 23 | -22.5 | 5' arm 3' arm | |||
21200 | + | 24077 | 90 | 23 | -22.5 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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