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GenBank Identifier | RefSeq Acc. | Name |
32453825 | NC_004927.1 | Halovirus HF1 |
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ID | strand | start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
22194 | - | 75526 | 89 | 23 | -26.1 | NP_861690 | 5' arm 3' arm | ||
22171 | - | 61345 | 90 | 19 | -23.7 | NP_861672 | 3' arm | ||
22168 | - | 58973 | 85 | 19.5 | -23.3 | NP_861668 | 5' arm | ||
22174 | - | 62565 | 90 | 19.5 | -19.6 | NP_861674 | 5' arm 3' arm | ||
22184 | - | 68829 | 86 | 20 | -23.7 | NP_861680 | 5' arm 3' arm | ||
22162 | - | 57390 | 90 | 21 | -29.5 | NP_861667 | 5' arm 3' arm | ||
22160 | - | 56884 | 89 | 24.5 | -22.9 | NP_861666 | 5' arm 3' arm | ||
22183 | - | 68548 | 89 | 22.5 | -25.9 | NP_861679 | 5' arm 3' arm | ||
22164 | - | 57800 | 90 | 22 | -20.4 | NP_861668 | 5' arm 3' arm | ||
22165 | - | 57928 | 90 | 22.5 | -22.2 | NP_861668 | 5' arm 3' arm | ||
22191 | - | 74069 | 88 | 19 | -22.5 | NP_861689 | 5' arm 3' arm | ||
22192 | - | 74256 | 90 | 19.5 | -23.2 | NP_861689 | 5' arm 3' arm | ||
22156 | - | 53844 | 89 | 19 | -22.8 | NP_861662 | 5' arm 3' arm | ||
22158 | - | 54222 | 86 | 21 | -26.4 | NP_861662 | 5' arm 3' arm | ||
22169 | - | 59220 | 86 | 20.5 | -21.6 | NP_861668 | 5' arm 3' arm | ||
22178 | - | 64326 | 89 | 23 | -29.6 | NP_861675 | 5' arm 3' arm | ||
22181 | - | 68141 | 86 | 19.5 | -24.4 | NP_861678 | 5' arm 3' arm | ||
22193 | - | 75437 | 90 | 19.5 | -22.8 | NP_861690 | 5' arm 3' arm | ||
22172 | - | 61594 | 90 | 23 | -26.6 | NP_861672 | 5' arm 3' arm | ||
22173 | - | 61706 | 90 | 21.5 | -24.7 | NP_861672 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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