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| GenBank Identifier | RefSeq Acc. | Name |
| 47777280 | NC_005263.2 | Burkholderia cenocepacia phage Bcep1 |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 24218 | + | 40362 | 88 | 19 | -24.04 | YP_022514 | 5' arm 3' arm | ||
| 24229 | + | 47815 | 87 | 22.5 | -24.6 | NP_944378 | 5' arm 3' arm | ||
| 24228 | + | 47710 | 87 | 20.5 | -27.7 | NP_944378 | 5' arm 3' arm | ||
| 24329 | - | 47464 | 85 | 20 | -23.5 | NP_944377 | 5' arm 3' arm | ||
| 24330 | - | 47599 | 89 | 20 | -21.1 | NP_944377 | 5' arm 3' arm | ||
| 24327 | - | 46545 | 90 | 23 | -21.9 | NP_944376 | 5' arm 3' arm | ||
| 24328 | - | 46659 | 89 | 21.5 | -24.1 | NP_944376 | 5' arm 3' arm | ||
| 24323 | - | 44636 | 90 | 22.5 | -22.1 | NP_944374 | 5' arm 3' arm | ||
| 24227 | + | 45332 | 87 | 22.5 | -25.3 | NP_944374 | 5' arm 3' arm | ||
| 24325 | - | 45234 | 87 | 21 | -24.2 | NP_944374 | 5' arm 3' arm | ||
| 24324 | - | 44842 | 90 | 24 | -27.8 | NP_944374 | 5' arm 3' arm | ||
| 24226 | + | 45147 | 89 | 22 | -24.7 | NP_944374 | 5' arm 3' arm | ||
| 24225 | + | 44546 | 88 | 20.5 | -21.13 | NP_944374 | 5' arm 3' arm | ||
| 24321 | - | 44343 | 89 | 21.5 | -20 | NP_944374 | 5' arm 3' arm | ||
| 24326 | - | 45553 | 83 | 22.5 | -28.4 | NP_944374 | 5' arm 3' arm | ||
| 24224 | + | 43955 | 90 | 19 | -20.1 | NP_944374 | 5' arm 3' arm | ||
| 24322 | - | 44472 | 84 | 20 | -22.2 | NP_944374 | 5' arm 3' arm | ||
| 24320 | - | 42991 | 89 | 23 | -25.6 | NP_944370 | 5' arm 3' arm | ||
| 24223 | + | 42903 | 89 | 19.5 | -28.7 | NP_944370 | 5' arm 3' arm | ||
| 24222 | + | 42123 | 85 | 21 | -23.4 | NP_944368 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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