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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 6865 | + | 119117 | 79 | 22.5 | -27 | NP_046295 | 5' arm 3' arm | ||
| 7014 | - | 118252 | 89 | 23 | -23.3 | NP_046294 | 5' arm 3' arm | ||
| 6864 | + | 118387 | 90 | 19.5 | -21.2 | NP_046294 | 5' arm 3' arm | ||
| 6861 | + | 116660 | 89 | 21.5 | -19.7 | NP_046293 | 5' arm 3' arm | ||
| 6862 | + | 117407 | 90 | 23 | -23.1 | NP_046293 | 5' arm 3' arm | ||
| 7013 | - | 117413 | 88 | 19.5 | -21.6 | NP_046293 | 5' arm 3' arm | ||
| 6860 | + | 115863 | 85 | 19 | -32.3 | NP_046292 | 5' arm 3' arm | ||
| 7010 | - | 113516 | 89 | 22.5 | -20.9 | NP_046290 | 5' arm 3' arm | ||
| 7012 | - | 114306 | 90 | 21 | -19.9 | NP_046290 | 5' arm 3' arm | ||
| 7011 | - | 113938 | 89 | 20 | -25.5 | NP_046290 | 5' arm 3' arm | ||
| 7009 | - | 113357 | 90 | 20 | -20.3 | NP_046290 | 5' arm 3' arm | ||
| 6856 | + | 113569 | 90 | 24 | -19.8 | NP_046290 | 5' arm 3' arm | ||
| 6857 | + | 114218 | 87 | 22.5 | -22.1 | NP_046290 | 5' arm 3' arm | ||
| 7008 | - | 112136 | 88 | 19 | -25.5 | NP_046288 | 5' arm 3' arm | ||
| 6853 | + | 110042 | 89 | 19 | -20.4 | NP_046287 | 5' arm 3' arm | ||
| 7006 | - | 110616 | 85 | 23.5 | -19.82 | NP_046287 | 5' arm 3' arm | ||
| 7007 | - | 111267 | 81 | 20 | -26.5 | NP_046287 | 5' arm 3' arm | ||
| 6855 | + | 111186 | 83 | 22 | -31.6 | NP_046287 | 5' arm 3' arm | ||
| 6854 | + | 110698 | 87 | 20.5 | -19.5 | NP_046287 | 5' arm 3' arm | ||
| 7005 | - | 109446 | 88 | 21.5 | -20.5 | NP_046286 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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