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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 7004 | - | 108827 | 86 | 22 | -32.9 | NP_046285 | 5' arm 3' arm | ||
| 6852 | + | 104754 | 90 | 20.5 | -24.7 | NP_046282 | 5' arm 3' arm | ||
| 7002 | - | 104196 | 82 | 22.5 | -23.1 | NP_046281 | 5' arm 3' arm | ||
| 7003 | - | 104340 | 85 | 22 | -22.7 | NP_046281 | 5' arm 3' arm | ||
| 6851 | + | 103994 | 89 | 20 | -23 | NP_046281 | 5' arm 3' arm | ||
| 6999 | - | 102768 | 83 | 20 | -20 | NP_046280 | 5' arm 3' arm | ||
| 7000 | - | 103038 | 90 | 22.5 | -24.8 | NP_046280 | 5' arm 3' arm | ||
| 7001 | - | 103161 | 90 | 21 | -22.2 | NP_046280 | 5' arm 3' arm | ||
| 6850 | + | 102180 | 90 | 23 | -24.5 | NP_046280 | 5' arm 3' arm | ||
| 6849 | + | 102062 | 87 | 19 | -30.2 | NP_046280 | 5' arm 3' arm | ||
| 6848 | + | 100334 | 89 | 20 | -23.1 | NP_046278 | 5' arm 3' arm | ||
| 6847 | + | 100218 | 88 | 23 | -30.4 | NP_046278 | 5' arm 3' arm | ||
| 6846 | + | 99396 | 87 | 21 | -26.7 | NP_046277 | 5' arm 3' arm | ||
| 6994 | - | 99511 | 88 | 20.5 | -24 | NP_046277 | 5' arm 3' arm | ||
| 6993 | - | 98984 | 90 | 22.5 | -25.6 | NP_046275 | 5' arm 3' arm | ||
| 6845 | + | 98604 | 89 | 19.5 | -27.24 | NP_046275 | 5' arm 3' arm | ||
| 6844 | + | 98348 | 88 | 19 | -29.7 | NP_046275 | 5' arm 3' arm | ||
| 6990 | - | 98028 | 90 | 22 | -32.3 | NP_046275 | 5' arm 3' arm | ||
| 6989 | - | 97849 | 90 | 24 | -23.3 | NP_046275 | 5' arm 3' arm | ||
| 6842 | + | 97850 | 87 | 24 | -30 | NP_046275 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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