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| GenBank Identifier | RefSeq Acc. | Name |
| 11038431 | NC_001875.2 | Orgyia pseudotsugata multicapsid nucleopolyhedrovirus |
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| ID |
strand
|
start position | length | sRNA loop score | core MFE. | NP ORF | Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 7001 | - | 103161 | 90 | 21 | -22.2 | NP_046280 | 5' arm 3' arm | ||
| 7011 | - | 113938 | 89 | 20 | -25.5 | NP_046290 | 5' arm 3' arm | ||
| 7023 | - | 130150 | 90 | 24.5 | -23.8 | 5' arm 3' arm | |||
| 7003 | - | 104340 | 85 | 22 | -22.7 | NP_046281 | 5' arm 3' arm | ||
| 7024 | - | 130279 | 90 | 24.5 | -23.61 | 5' arm 3' arm | |||
| 6975 | - | 84454 | 90 | 19 | -22.7 | NP_046257 | 5' arm 3' arm | ||
| 7020 | - | 128791 | 85 | 23.5 | -21.9 | NP_046307 | 5' arm 3' arm | ||
| 6974 | - | 83539 | 90 | 22 | -23.6 | NP_046255 | 5' arm 3' arm | ||
| 6979 | - | 87199 | 85 | 21 | -29.5 | NP_046260 | 5' arm 3' arm | ||
| 6981 | - | 88437 | 83 | 27 | -23.1 | NP_046261 | 5' arm 3' arm | ||
| 6992 | - | 98881 | 90 | 19.5 | -23.4 | NP_046275 | 5' arm 3' arm | ||
| 6990 | - | 98028 | 90 | 22 | -32.3 | NP_046275 | 5' arm 3' arm | ||
| 6989 | - | 97849 | 90 | 24 | -23.3 | NP_046275 | 5' arm 3' arm | ||
| 6995 | - | 101337 | 90 | 26 | -22.6 | 5' arm 3' arm | |||
| 6998 | - | 101733 | 90 | 26 | -22.3 | 5' arm 3' arm | |||
| 7009 | - | 113357 | 90 | 20 | -20.3 | NP_046290 | 5' arm 3' arm | ||
| 7006 | - | 110616 | 85 | 23.5 | -19.82 | NP_046287 | 5' arm 3' arm | ||
| 7014 | - | 118252 | 89 | 23 | -23.3 | NP_046294 | 5' arm 3' arm | ||
| 7018 | - | 125225 | 90 | 21.5 | -32.2 | NP_046302 | 5' arm 3' arm | ||
| 7022 | - | 129629 | 85 | 21.5 | -20.2 | NP_046307 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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