miRNA display CGI


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GenBank Identifier RefSeq Acc. Name
62327168 NC_006938.1 Bacteriophage phi JL001

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ID strand start position length sRNA loop score core MFE. NP ORF Known viral miRNA Match to own genomic region# Target prediction with RNAhybrid
31890 - 51338 89 20 -20.5 YP_224006 5' arm      3' arm
31891 - 51661 90 21.5 -19.8 YP_224006 5' arm      3' arm
31898 - 54536 89 22 -30.3 YP_224008 5' arm      3' arm
31910 - 62884 90 20 -22 YP_224012 5' arm      3' arm
31879 - 42613 89 21 -30.8 YP_223995 5' arm      3' arm
31883 - 48145 90 20.5 -23.1 YP_224002 5' arm      3' arm
31895 - 53907 89 21.5 -27 YP_224008 5' arm      3' arm
31908 - 62332 89 22.5 -25.6 YP_224012 5' arm      3' arm
31885 - 49065 89 21.5 -26.6 YP_224003 5' arm      3' arm
31909 - 62421 89 23 -21.1 YP_224012 5' arm      3' arm
31894 - 53499 90 21.5 -22.7 YP_224008 5' arm      3' arm
31893 - 52701 85 19.5 -23.3 YP_224007 5' arm      3' arm
31900 - 56032 89 19.5 -25.2 YP_224010 5' arm      3' arm
31897 - 54320 87 22 -32.7 YP_224008 5' arm      3' arm
31907 - 59492 86 19 -26.06 YP_224011 5' arm      3' arm
31906 - 59248 90 19.5 -20.5 YP_224011 5' arm      3' arm
31870 - 39921 90 25.5 -21.1 YP_223992 5' arm      3' arm
31876 - 41014 89 20 -22.9 YP_223993 5' arm      3' arm
31881 - 46320 89 19 -21.9 YP_223999 5' arm      3' arm
31882 - 46678 90 20.5 -27.7 YP_224000 5' arm      3' arm
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* Note: Click the field header to sort on a field. Click it again to reverse the sorted list.
# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.