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| GenBank Identifier | RefSeq Acc. | Name |
| 72257064 | NC_005886.2 | Burkholderia cenocepacia phage BcepB1A |
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| ID | strand | start position | length | sRNA loop score | core MFE. |
NP ORF
|
Known viral miRNA | Match to own genomic region# | Target prediction with RNAhybrid |
| 27971 | - | 17010 | 89 | 19 | -24.6 | YP_024871 | 5' arm 3' arm | ||
| 27970 | - | 16788 | 90 | 21 | -23.7 | YP_024871 | 5' arm 3' arm | ||
| 27973 | - | 17745 | 89 | 19.5 | -24 | YP_024872 | 5' arm 3' arm | ||
| 27930 | + | 17623 | 90 | 22.5 | -23.8 | YP_024872 | 5' arm 3' arm | ||
| 27931 | + | 18201 | 90 | 22 | -19.5 | YP_024873 | 5' arm 3' arm | ||
| 27974 | - | 20494 | 89 | 21.5 | -20.4 | YP_024874 | 5' arm 3' arm | ||
| 27932 | + | 20406 | 89 | 21.5 | -26.4 | YP_024874 | 5' arm 3' arm | ||
| 27935 | + | 22035 | 89 | 21 | -23.2 | YP_024875 | 5' arm 3' arm | ||
| 27933 | + | 20904 | 87 | 22 | -27.9 | YP_024875 | 5' arm 3' arm | ||
| 27975 | - | 20981 | 90 | 20.5 | -23.8 | YP_024875 | 5' arm 3' arm | ||
| 27934 | + | 21220 | 90 | 20.5 | -23.2 | YP_024875 | 5' arm 3' arm | ||
| 27976 | - | 23031 | 89 | 20 | -25.4 | YP_024877 | 5' arm 3' arm | ||
| 27937 | + | 24138 | 90 | 19.5 | -19.4 | YP_024878 | 5' arm 3' arm | ||
| 27977 | - | 24469 | 87 | 21 | -21.4 | YP_024878 | 5' arm 3' arm | ||
| 27939 | + | 27209 | 87 | 20 | -22.8 | YP_024883 | 5' arm 3' arm | ||
| 27942 | + | 29703 | 90 | 20.5 | -19.5 | YP_024888 | 5' arm 3' arm | ||
| 27981 | - | 30044 | 90 | 24 | -19.5 | YP_024888 | 5' arm 3' arm | ||
| 27941 | + | 29535 | 90 | 22.5 | -20.1 | YP_024888 | 5' arm 3' arm | ||
| 27982 | - | 32552 | 79 | 21 | -25.4 | YP_024889 | 5' arm 3' arm | ||
| 27983 | - | 32661 | 89 | 21.5 | -19.8 | YP_024889 | 5' arm 3' arm |
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# Note: We used the same viral genomic sequence for potential target identification for viral miRNAs. It is likely that viral miRNA could serve as a self-mediated feedback regulation.
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